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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003545000
- symbol?: dprA
- synonym:
- description?: DNA processing protein DprA
- DNA processing protein DprA
- DNA protecting protein DprA
- DNA processing protein
- DNA processing protein DprA, putative
- DNA processing Smf protein
- DNA recombination-mediator protein
- protein smf. domain protein
- pseudogene
- Rossmann fold nucleotide-binding protein Smf
- SMF family nucleotide-binding protein
- SMF family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3881250..3882790
- synteny block?: BlockID0026220
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
C248_1280
11819-97:
MS7_1207 (dprA)
6850:
RSAU_001131 (dprA)
71193:
ST398NM01_1251
ECT-R 2:
ECTR2_1105
ED133:
SAOV_1251
ED98:
SAAV_1223
HO 5096 0412:
SAEMRSA15_10820
JH1:
SaurJH1_1333
JH9:
SaurJH9_1308
JKD6008:
SAA6008_01204
JKD6159:
SAA6159_01104
LGA251:
SARLGA251_11600
M013:
M013TW_1187
MRSA252:
SAR1225
MSHR1132:
SAMSHR1132_10920
MSSA476:
SAS1183
Mu3:
SAHV_1239
Mu50:
SAV1249
MW2:
MW1132
RF122:
SAB1111 (smf)
ST398:
SAPIG1251 (dprA)
T0131:
SAT0131_01300
TCH60:
HMPREF0772_11981 (dprA)
TW20:
SATW20_12430
USA300_TCH1516:
USA300HOU_1180
VC40:
SAVC_05410
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAF
N315 MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVLLLRKYYAF
NCTC8325 --------------------------------------------MNREENVHLLRKYYAF
Newman MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAF
USA300_FPR3757 MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAF
:****** ********
COL IKLDHNDIIKELQKLKVSYITYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVG
N315 IKLDHNDIIKELQKLKVSYITYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVG
NCTC8325 IKLDHNDIIKELQKLKVSYITYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVG
Newman IKLDHNDIIKELQKLKVSYITYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVG
USA300_FPR3757 IKLDHNDIIKELQKLKVSYITYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVG
************************************************************
COL ARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTH
N315 ARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTH
NCTC8325 ARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTH
Newman ARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTH
USA300_FPR3757 ARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQIALKYNLPTIAVLAFGHQTH
************************************************************
COL YPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
N315 YPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
NCTC8325 YPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
Newman YPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
USA300_FPR3757 YPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
************************************************************
COL TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI
N315 TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI
NCTC8325 TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI
Newman TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI
USA300_FPR3757 TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI
**************************************************