PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003479000
• symbol^?: pyrP
• synonym:
• description^?: uracil permease

  descriptions from strain specific annotations:

  • uracil permease
  • uracil permease PyrP, putative
  • uracil transporter
  • NCS family uracil:cation symporter
  • putative uracil permease
  • uracil permease (Uracil transporter)
• strand^?: +
• coordinates^?: 3818239..3819555
• synteny block^?: BlockID0025580
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1211 (uraA)
N315:
SA1042 (pyrP)
NCTC8325:
SAOUHSC_01165
Newman:
NWMN_1110 (pyrP)
USA300_FPR3757:
SAUSA300_1092 (pyrP)
04-02981:
SA2981_1157 (pyrP)
08BA02176:
C248_1228 (pyrP)
11819-97:
MS7_1156 (pyrP)
6850:
RSAU_001082 (pyrP)
71193:
ST398NM01_1196
ECT-R 2:
ECTR2_1054
ED133:
SAOV_1202
ED98:
SAAV_1170 (uraA)
HO 5096 0412:
SAEMRSA15_10320 (pyrP)
JH1:
SaurJH1_1283
JH9:
SaurJH9_1258
JKD6008:
SAA6008_01153 (uraA)
JKD6159:
SAA6159_01052 (uraA)
LGA251:
SARLGA251_11100 (pyrP)
M013:
M013TW_1134
MRSA252:
SAR1175 (pyrP)
MSHR1132:
SAMSHR1132_10400
MSSA476:
SAS1133
Mu3:
SAHV_1189 (pyrP)
Mu50:
SAV1199 (pyrP)
MW2:
MW1082 (pyrP)
RF122:
SAB1063 (pyrP)
ST398:
SAPIG1196
T0131:
SAT0131_01246
TCH60:
HMPREF0772_12033 (pyrP)
TW20:
SATW20_11930 (pyrP)
USA300_TCH1516:
USA300HOU_1137 (pyrP)
VC40:
SAVC_05160

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MQNDEMFERTVKPVLDVNEKPQPAQWAFLSLQHLFAMFGATVLVPFLTGLPISAALLASG
  N315            MQNDEMFERTVKPVLDVNEKPQPAQWAFLSLQHLFAMFGATVLVPFLTGLPISAALLASG
  NCTC8325        MQNDEMFERTVKPVLDVNEKPQPAQWAFLSLQHLFAMFGATVLVPFLTGLPISAALLASG
  Newman          MQNDEMFERTVKPVLDVNEKPQPAQWAFLSLQHLFAMFGATVLVPFLTGLPISAALLASG
  USA300_FPR3757  MQNDEMFERTVKPVLDVNEKPQPAQWAFLSLQHLFAMFGATVLVPFLTGLPISAALLASG
                  ************************************************************
  
  COL             IGTLLYILITKAQIPAYLGSSFAFITPIITGLSTHSLGDMLVALFMSGVMYVIIGILIKL
  N315            IGTLLYILITKAQIPAYLGSSFAFITPIITGLSTHSLGDMLVALFMSGVMYVIIGILIKL
  NCTC8325        IGTLLYILITKAQIPAYLGSSFAFITPIITGLSTHSLGDMLVALFMSGVMYVIIGILIKL
  Newman          IGTLLYILITKAQIPAYLGSSFAFITPIITGLSTHSLGDMLVALFMSGVMYVIIGILIKL
  USA300_FPR3757  IGTLLYILITKAQIPAYLGSSFAFITPIITGLSTHSLGDMLVALFMSGVMYVIIGILIKL
                  ************************************************************
  
  COL             SGTAWLMKLLPPVVVGPVIMVIGLSLAPTAVNMAMYENPGDMKGYNISFLIVAMITLLVT
  N315            SGTAWLMKLLPPVVVGPVIMVIGLSLAPTAVNMAMYENPGDMKGYNISFLIVAMITLLVT
  NCTC8325        SGTAWLMKLLPPVVVGPVIMVIGLSLAPTAVNMAMYENPGDMKGYNISFLIVAMITLLVT
  Newman          SGTAWLMKLLPPVVVGPVIMVIGLSLAPTAVNMAMYENPGDMKGYNISFLIVAMITLLVT
  USA300_FPR3757  SGTAWLMKLLPPVVVGPVIMVIGLSLAPTAVNMAMYENPGDMKGYNISFLIVAMITLLVT
                  ************************************************************
  
  COL             IVVQGFFKGFLSLIPVLVGIIVGYVVAIFMGIVKFDAIMSAKWIDFPHIYLPFKDYVPSF
  N315            IVVQGFFKGFLSLIPVLVGIIVGYVVAIFMGIVKFDAIMSAKWIDFPHIYLPFKDYVPSF
  NCTC8325        IVVQGFFKGFLSLIPVLVGIIVGYVVAIFMGIVKFDAIMSAKWIDFPHIYLPFKDYVPSF
  Newman          IVVQGFFKGFLSLIPVLVGIIVGYVVAIFMGIVKFDAIMSAKWIDFPHIYLPFKDYVPSF
  USA300_FPR3757  IVVQGFFKGFLSLIPVLVGIIVGYVVAIFMGIVKFDAIMSAKWIDFPHIYLPFKDYVPSF
                  ************************************************************
  
  COL             HLGLVLVMIPIVFVTVSEHIGHQMVLNKIVGRNFFEKPGLDKSIIGDGVSTMFASIIGGP
  N315            HLGLVLVMIPIVFVTVSEHIGHQMVLNKIVGRNFFEKPGLDKSIIGDGVSTMFASIIGGP
  NCTC8325        HLGLVLVMIPIVFVTVSEHIGHQMVLNKIVGRNFFEKPGLDKSIIGDGVSTMFASIIGGP
  Newman          HLGLVLVMIPIVFVTVSEHIGHQMVLNKIVGRNFFEKPGLDKSIIGDGVSTMFASIIGGP
  USA300_FPR3757  HLGLVLVMIPIVFVTVSEHIGHQMVLNKIVGRNFFEKPGLDKSIIGDGVSTMFASIIGGP
                  ************************************************************
  
  COL             PSTTYGENIGVLAITRIYSIYVIGGAAVIAIVLAFIGKFTALISSIPTPVMGGVSILLFG
  N315            PSTTYGENIGVLAITRIYSIYVIGGAAVIAIVLAFIGKFTALISSIPTPVMGGVSILLFG
  NCTC8325        PSTTYGENIGVLAITRIYSIYVIGGAAVIAIVLAFIGKFTALISSIPTPVMGGVSILLFG
  Newman          PSTTYGENIGVLAITRIYSIYVIGGAAVIAIVLAFIGKFTALISSIPTPVMGGVSILLFG
  USA300_FPR3757  PSTTYGENIGVLAITRIYSIYVIGGAAVIAIVLAFIGKFTALISSIPTPVMGGVSILLFG
                  ************************************************************
  
  COL             IIAASGLRMLVESKVDFANNRNLVIASVILVVGIGNLVFNLKEIGINLQIEGMALAALSG
  N315            IIAASGLRMLVESKVDFANNRNLVIASVILVVGIGNLVFNLKEIGINLQIEGMALAALSG
  NCTC8325        IIAASGLRMLVESKVDFANNRNLVIASVILVVGIGNLVFNLKEIGINLQIEGMALAALSG
  Newman          IIAASGLRMLVESKVDFANNRNLVIASVILVVGIGNLVFNLKEIGINLQIEGMALAALSG
  USA300_FPR3757  IIAASGLRMLVESKVDFANNRNLVIASVILVVGIGNLVFNLKEIGINLQIEGMALAALSG
                  ************************************************************
  
  COL             IILNLILPKEKKQNN
  N315            IILNLILPKEKKQNN
  NCTC8325        IILNLILPKEKKQNN
  Newman          IILNLILPKEKKQNN
  USA300_FPR3757  IILNLILPKEKKQNN
                  ***************