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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003387000
- symbol?: sdhC
- synonym:
- description?: succinate dehydrogenase cytochrome B558
- succinate dehydrogenase cytochrome B558
- succinate dehydrogenase, cytochrome b558 subunit
- succinate dehydrogenase cytochrome b-558 subunit
- succinate:quinone oxidoreductase
- Succinate:quinone oxidoreductase Type B subfamily 1, transmembrane subunit SdhC
- putative succinate dehydrogenase cytochromeb558
- succinate dehydrogenase cytochrome b558 subunit (Cytochrome b-558)
- succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family
- succinate dehydrogenase, cytochrome b556 subunit
- succinate dehydrogenase/fumarate reductase cytochrome b subunit
- Succinate dehydrogenase subunit C
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3749267..3749881
- synteny block?: BlockID0024700
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1103 (sdhC)
08BA02176:
C248_1176 (sdhC)
11819-97:
MS7_1104 (sdhC)
6850:
RSAU_001031 (sdhC)
71193:
ST398NM01_1143
ECT-R 2:
ECTR2_1001 (sdhC)
ED133:
SAOV_1144
ED98:
SAAV_1115 (sdhC)
HO 5096 0412:
SAEMRSA15_09770 (sdhC)
JH1:
SaurJH1_1228
JH9:
SaurJH9_1206
JKD6008:
SAA6008_01101 (sdhC)
JKD6159:
SAA6159_01001 (sdhC)
LGA251:
SARLGA251_10590 (sdhC)
M013:
M013TW_1080
MRSA252:
SAR1120 (sdhC)
MSHR1132:
SAMSHR1132_09930
MSSA476:
SAS1081
Mu3:
SAHV_1138 (sdhC)
Mu50:
SAV1147 (sdhC)
MW2:
MW1030 (sdhC)
RF122:
SAB1011 (sdhC)
ST398:
SAPIG1143
T0131:
SAT0131_01189 (cbiO)
TCH60:
HMPREF0772_12086 (sdhC)
TW20:
SATW20_11410 (sdhC)
USA300_TCH1516:
USA300HOU_1083 (sdhC)
VC40:
SAVC_04900
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVE
N315 MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVE
NCTC8325 MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVE
Newman MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVE
USA300_FPR3757 MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVE
************************************************************
COL FLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRL
N315 FLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRL
NCTC8325 FLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRL
Newman FLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRL
USA300_FPR3757 FLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRL
************************************************************
COL QKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRV
N315 QKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRV
NCTC8325 QKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRV
Newman QKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRV
USA300_FPR3757 QKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRV
************************************************************
COL FTWVSLIVFLVISYIGVTAIIAFM
N315 FTWVSLIVFLVISYIGVTAIIAFM
NCTC8325 FTWVSLIVFLVISYIGVTAIIAFM
Newman FTWVSLIVFLVISYIGVTAIIAFM
USA300_FPR3757 FTWVSLIVFLVISYIGVTAIIAFM
************************