PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003367000
• symbol^?: srtB
• synonym:
• description^?: SrtB family sortase

  descriptions from strain specific annotations:

  • SrtB family sortase
  • NPQTN specific sortase B
  • class B sortase
  • sortase
  • sortase B
  • peptidase C60B, sortase B
  • peptidase C60B sortase B
  • sortase, SrtB family
  • Sortase B family protein
  • sortase B transpeptidase
• strand^?: +
• coordinates^?: 3731763..3732497
• synteny block^?: BlockID0024500
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL1145 (srtB)
N315:
SA0982 (srtB)
NCTC8325:
SAOUHSC_01088
Newman:
NWMN_1046 (srtB)
USA300_FPR3757:
SAUSA300_1034 (srtB)
04-02981:
SA2981_1091 (srtB)
08BA02176:
C248_1161 (srtB)
11819-97:
MS7_1091 (srtB)
6850:
RSAU_001019 (srtB)
71193:
ST398NM01_1131
ECT-R 2:
ECTR2_989 (srtB)
ED133:
SAOV_1131 (srtB)
ED98:
SAAV_1101 (srtB)
HO 5096 0412:
SAEMRSA15_09640 (srtB)
JH1:
SaurJH1_1216
JH9:
SaurJH9_1194
JKD6008:
SAA6008_01089 (srtB)
JKD6159:
SAA6159_00989 (srtB)
LGA251:
SARLGA251_10470 (srtB)
M013:
M013TW_1068
MRSA252:
SAR1108 (srtB)
MSHR1132:
SAMSHR1132_09810
MSSA476:
SAS1069
Mu3:
SAHV_1126
Mu50:
SAV1135
MW2:
MW1017 (srtB)
RF122:
SAB0999 (srtB)
ST398:
SAPIG1131 (srtB)
T0131:
SAT0131_01175 (budB)
TCH60:
HMPREF0772_12098 (srtB)
TW20:
SATW20_11290 (srtB)
USA300_TCH1516:
—
VC40:
SAVC_04840

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQEHVRPQ
  N315            MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQEHVRPQ
  NCTC8325        MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQEHVRPQ
  Newman          MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQEHVRPQ
  USA300_FPR3757  MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQEHVRPQ
                  ************************************************************
  
  COL             FESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKN
  N315            FESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKN
  NCTC8325        FESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKN
  Newman          FESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKN
  USA300_FPR3757  FESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKN
                  ************************************************************
  
  COL             LNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDN
  N315            LNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDN
  NCTC8325        LNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDN
  Newman          LNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDN
  USA300_FPR3757  LNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDN
                  ************************************************************
  
  COL             YIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKI
  N315            YIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKI
  NCTC8325        YIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKI
  Newman          YIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKI
  USA300_FPR3757  YIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKI
                  ***********************************:************************
  
  COL             IKVS
  N315            IKVS
  NCTC8325        IKVS
  Newman          IKVS
  USA300_FPR3757  IKVS
                  ****