PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003360000
• symbol^?: isdC
• synonym:
• description^?: iron-regulated surface determinant protein C

  descriptions from strain specific annotations:

  • iron-regulated surface determinant protein C
  • heme-iron transport protein IsdC
  • heme uptake protein IsdC
  • iron-regulated cell surface protein
  • iron transport associated domain-containing protein
  • NPQTN cell wall surface anchor protein
  • iron (Fe2+)-regulated surface determinant protein IsdC
  • iron-regulated surface determinant protein C (Staphylococcaliron-regulated protein D)
  • Iron-regulated surface determinant protein C precursor
  • NEAr transporter
  • NPQTN cell wall anchored protein IsdC
  • putative surface anchored protein
  • putative surface protein
  • sortase B signal domain, NPQTN class domain protein
  • surface anchored protein
• strand^?: +
• coordinates^?: 3727275..3727959
• synteny block^?: BlockID0024430
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1141 (isdC)
N315:
SA0978 (isdC)
NCTC8325:
SAOUHSC_01082
Newman:
NWMN_1042 (isdC)
USA300_FPR3757:
SAUSA300_1030
04-02981:
SA2981_1087 (isdC)
08BA02176:
C248_1157 (isdC)
11819-97:
MS7_1087 (isdC)
6850:
RSAU_001015 (isdC)
71193:
ST398NM01_1127
ECT-R 2:
ECTR2_985
ED133:
SAOV_1127 (isdC)
ED98:
SAAV_1097 (isdC)
HO 5096 0412:
SAEMRSA15_09600 (isdC)
JH1:
SaurJH1_1212
JH9:
SaurJH9_1190
JKD6008:
SAA6008_01085 (isdC)
JKD6159:
SAA6159_00985 (isdC)
LGA251:
SARLGA251_10430 (isdC)
M013:
M013TW_1062
MRSA252:
SAR1104 (isdC)
MSHR1132:
SAMSHR1132_09770
MSSA476:
SAS1065
Mu3:
SAHV_1122
Mu50:
SAV1131
MW2:
MW1013 (isdC)
RF122:
SAB0995 (isdC)
ST398:
SAPIG1127
T0131:
SAT0131_01170
TCH60:
HMPREF0772_12102 (isdC)
TW20:
SATW20_11250 (isdC)
USA300_TCH1516:
USA300HOU_1065 (isdC)
VC40:
SAVC_04815

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYI
  N315            MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYI
  NCTC8325        MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYI
  Newman          MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYI
  USA300_FPR3757  MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYI
                  ************************************************************
  
  COL             KKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKIDGKIDVY
  N315            KKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKIDGKIDVY
  NCTC8325        KKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKIDGKIDVY
  Newman          KKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKIDGKIDVY
  USA300_FPR3757  KKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKIDGKIDVY
                  ************************************************************
  
  COL             IDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGTTTGQSESN
  N315            IDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGTTTGQSESN
  NCTC8325        IDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGTTTGQSESN
  Newman          IDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGTTTGQSESN
  USA300_FPR3757  IDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGTTTGQSESN
                  ************************************************************
  
  COL             SSNKDKVENPQTNAGTPAYIYTIPVASLALLIAITLFVRKKSKGNVE
  N315            SSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE
  NCTC8325        SSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE
  Newman          SSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE
  USA300_FPR3757  SSNKDKVENPQTNAGTPAYIYAIPVASLALLIAITLFVRKKSKGNVE
                  *********************:*************************