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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002705000
- symbol?: gapR
- synonym:
- description?: glycolytic operon regulator
- glycolytic operon regulator
- transcriptional regulator
- sugar-binding transcriptional regulator
- Central glycolytic genes regulator
- DeoR family transcriptional regulator
- putative sugar-binding domain protein
- sugar-binding domain-containing protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3193814..3194830
- synteny block?: BlockID0019370
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0749 (gapR)
08BA02176:
C248_0862 (gapR)
11819-97:
MS7_0822
6850:
RSAU_000749 (gapR)
71193:
ST398NM01_0850
ECT-R 2:
ECTR2_722
ED133:
SAOV_0813
ED98:
SAAV_0737 (gapR)
HO 5096 0412:
SAEMRSA15_06980 (gapR)
JH1:
SaurJH1_0812
JH9:
SaurJH9_0796
JKD6008:
SAA6008_00786
JKD6159:
SAA6159_00728
LGA251:
SARLGA251_07050 (gapR)
M013:
M013TW_0762
MRSA252:
SAR0827 (gapR)
MSHR1132:
SAMSHR1132_07170
MSSA476:
SAS0737
Mu3:
SAHV_0768 (gapR)
Mu50:
SAV0771 (gapR)
MW2:
MW0733 (gapR)
RF122:
SAB0727 (gapR)
ST398:
SAPIG0850
T0131:
SAT0131_00843
TCH60:
HMPREF0772_12407 (cggR)
TW20:
SATW20_08460 (gapR)
USA300_TCH1516:
USA300HOU_0801
VC40:
SAVC_03500
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKK
N315 MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKK
NCTC8325 MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKK
Newman MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKK
USA300_FPR3757 MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKK
************************************************************
COL QDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNS
N315 QDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNS
NCTC8325 QDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNS
Newman QDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNS
USA300_FPR3757 QDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNS
************************************************************
COL QSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENV
N315 QSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENV
NCTC8325 QSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENV
Newman QSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENV
USA300_FPR3757 QSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENV
************************************************************
COL VFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
N315 VFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
NCTC8325 VFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
Newman VFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
USA300_FPR3757 VFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIG
************************************************************
COL DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIF
N315 DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIF
NCTC8325 DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIF
Newman DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIF
USA300_FPR3757 DALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIF
************************************************************
COL AVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
N315 AVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
NCTC8325 AVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
Newman AVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
USA300_FPR3757 AVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
*************************************