PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002302000
• symbol^?: sigH
• synonym:
• description^?: RNA polymerase sigma factor

  descriptions from strain specific annotations:

  • RNA polymerase sigma factor
  • RNA polymerase sigma factor, putative
  • ECF subfamily RNA polymerase sigma-24 factor
  • igma-70 family RNA polymerase sigma factor
  • putative DNA-binding protein
  • putative RNA polymerase, sigma factor
  • putative RNA polymerase sigma factor, sigma-70 family
  • RNA polymerase factor sigma-70
  • RNA polymerase sigma-H factor
  • RNA polymerase sporulation specific sigmafactor SigH
• strand^?: +
• coordinates^?: 2822374..2822943
• synteny block^?: BlockID0016010
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0580
N315:
SA0492
NCTC8325:
SAOUHSC_00515
Newman:
NWMN_0496
USA300_FPR3757:
SAUSA300_0519
04-02981:
SA2981_0509
08BA02176:
C248_0607 (sigH)
11819-97:
MS7_0523
6850:
RSAU_000485
71193:
ST398NM01_0609
ECT-R 2:
ECTR2_487
ED133:
SAOV_0569
ED98:
SAAV_0495
HO 5096 0412:
SAEMRSA15_04600 (sigH)
JH1:
SaurJH1_0570
JH9:
SaurJH9_0556
JKD6008:
SAA6008_00540
JKD6159:
SAA6159_00487
LGA251:
SARLGA251_04690 (sigH)
M013:
M013TW_0518
MRSA252:
SAR0537 (sigH)
MSHR1132:
SAMSHR1132_04780
MSSA476:
SAS0491
Mu3:
SAHV_0531
Mu50:
SAV0533
MW2:
MW0489
RF122:
SAB0484
ST398:
SAPIG0609
T0131:
SAT0131_00586 (bsaP)
TCH60:
HMPREF0772_12656 (sigH)
TW20:
SATW20_06030 (sigH)
USA300_TCH1516:
USA300HOU_0527
VC40:
SAVC_02255

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
  N315            MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
  NCTC8325        MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
  Newman          MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
  USA300_FPR3757  MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
                  ****************:*******************************************
  
  COL             RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
  N315            RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
  NCTC8325        RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
  Newman          RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
  USA300_FPR3757  RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
                  ************************************************************
  
  COL             ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
  N315            ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
  NCTC8325        ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
  Newman          ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
  USA300_FPR3757  ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
                  ************************************************************
  
  COL             KIKRYFKMI
  N315            KIKRYFKMI
  NCTC8325        KIKRYFKMI
  Newman          KIKRYFKMI
  USA300_FPR3757  KIKRYFKMI
                  *********