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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002293000
- symbol?: —
- synonym:
- description?: PIN/TRAM domain-containing protein
- PIN/TRAM domain-containing protein
- PilT domain-containing protein
- PIN-YacL domain protein
- Integral membrane protein (PIN domain superfamily)
- membrane associated protein
- Membrane-associated protein containing a PilT-like ATPase N-terminal domain
- Pili retraction protein pilT
- PilT protein domain-containing protein
- PIN domain-containing protein
- PIN domain protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2815049..2816122
- synteny block?: BlockID0015920
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0502 (pilT)
08BA02176:
C248_0599
11819-97:
MS7_0516
6850:
RSAU_000478
71193:
ST398NM01_0602
ECT-R 2:
ECTR2_480
ED133:
SAOV_0562
ED98:
SAAV_0488
HO 5096 0412:
SAEMRSA15_04530
JH1:
SaurJH1_0563
JH9:
SaurJH9_0549
JKD6008:
SAA6008_00533
JKD6159:
SAA6159_00480
LGA251:
SARLGA251_04620
M013:
M013TW_0511
MRSA252:
SAR0530
MSHR1132:
SAMSHR1132_04710
MSSA476:
SAS0484
Mu3:
SAHV_0524
Mu50:
SAV0527
MW2:
MW0482
RF122:
SAB0477
ST398:
SAPIG0602
T0131:
SAT0131_00579 (splC)
TCH60:
HMPREF0772_12664
TW20:
SATW20_05960
USA300_TCH1516:
USA300HOU_0520
VC40:
SAVC_02220
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNIVKLMVIIIYLIIGSALGIIIIPEIANDLGLQNSSFLKNHYVDGIIGSIFMFLIFGVF
N315 MNIVKLMVIIIYLIIGSALGIIIIPEIANDLGLQNSSFLKNHYVDGIIGSIFMFLIFGVF
NCTC8325 ------MVIIIYLIIGSALGIIIIPEIANDLGLQNSSFLKNHYVDGIIGSIFMFLIFGVF
Newman MNIVKLMVIIIYLIIGSALGIIIIPEIANDLGLQNSSFLKNHYVDGIIGSIFMFLIFGVF
USA300_FPR3757 ------MVIIIYLIIGSALGIIIIPEIANDLGLQNSSFLKNHYVDGIIGSIFMFLIFGVF
******************************************************
COL IRRVTNAIKGLEHFIMRRSAVEILFATIGLIIGLLISVMVSFILESIGNSIFNHFIPVII
N315 IRRVTNAIKGLEHFIMRRSAVEILFATIGLIIGLLISVMVSFILESIGNSIFNHFIPVII
NCTC8325 IRRVTNAIKGLEHFIMRRSAVEILFATIGLIIGLLISVMVSFILESIGNSIFNHFIPVII
Newman IRRVTNAIKGLEHFIMRRSAVEILFATIGLIIGLLISVMVSFILESIGNSIFNHFIPVII
USA300_FPR3757 IRRVTNAIKGLEHFIMRRSAVEILFATIGLIIGLLISVMVSFILESIGNSIFNHFIPVII
************************************************************
COL TILLCYFGFQFGLKKRDEMLMFLPENIARSMSQHTKSATPKIIDTSAIIDGRILEVIRCG
N315 TILLCYFGFQFGLKKRDEMLMFLPENIARSMSQHTKSATPKIIDTSAIIDGRILEVIRCG
NCTC8325 TILLCYFGFQFGLKKRDEMLMFLPENIARSMSQHTKSATPKIIDTSAIIDGRILEVIRCG
Newman TILLCYFGFQFGLKKRDEMLMFLPENIARSMSQHTKSATPKIIDTSAIIDGRILEVIRCG
USA300_FPR3757 TILLCYFGFQFGLKKRDEMLMFLPENIARSMSQHTKSATPKIIDTSAIIDGRILEVIRCG
************************************************************
COL FIDGNILIPQGVINELQIVADSNDSVKREKGKRGLDILNELYDLDYPTKVIHPTKTHSDI
N315 FIDGNILIPQGVINELQIVADSNDSVKREKGKRGLDILNELYDLDYPTKVIHPTKTHSDI
NCTC8325 FIDGNILIPQGVINELQIVADSNDSVKREKGKRGLDILNELYDLDYPTKVIHPTKTHSDI
Newman FIDGNILIPQGVINELQIVADSNDSVKREKGKRGLDILNELYDLDYPTKVIHPTKTHSDI
USA300_FPR3757 FIDGNILIPQGVINELQIVADSNDSVKREKGKRGLDILNELYDLDYPTKVIHPTKTHSDI
************************************************************
COL DTMLLKLAKQYHASIITTDFNLNKVCHVHGIKALNVNDLSEAIKPNVHQGDQLHILLTKM
N315 DTMLLKLAKQYHASIITTDFNLNKVCHVHGIKALNVNDLSEAIKPNVHQGDQLHILLTKM
NCTC8325 DTMLLKLAKQYHASIITTDFNLNKVCHVHGIKALNVNDLSEAIKPNVHQGDQLHILLTKM
Newman DTMLLKLAKQYHASIITTDFNLNKVCHVHGIKALNVNDLSEAIKPNVHQGDQLHILLTKM
USA300_FPR3757 DTMLLKLAKQYHASIITTDFNLNKVCHVHGIKALNVNDLSEAIKPNVHQGDQLHILLTKM
************************************************************
COL GKEPGQAVGYLDDGTMVVVDNAKNLIGSHVNLEVVSLLQTSSGRIVFAKKIEDTVSL
N315 GKEPGQAVGYLDDGTMVVVDNAKNLIGSHVNLEVVSLLQTSSGRIVFAKKIEDTVSL
NCTC8325 GKEPGQAVGYLDDGTMVVVDNAKNLIGSHVNLEVVSLLQTSSGRIVFAKKIEDTVSL
Newman GKEPGQAVGYLDDGTMVVVDNAKNLIGSHVNLEVVSLLQTSSGRIVFAKKIEDTVSL
USA300_FPR3757 GKEPGQAVGYLDDGTMVVVDNAKNLIGSHVNLEVVSLLQTSSGRIVFAKKIEDTVSL
*********************************************************