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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001394000
- symbol?: dnaD2
- synonym:
- description?: replication protein DnaD
- replication protein DnaD
- phage regulatory protein
- phiPVL ORF046-like protein
- DNA replication protein DnaD
- primosome subunit DnaD
- pseudogene
- putative phage regulatory protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 1678631..1679197
- synteny block?: BlockID0008730
- occurrence?: in 24% of 33 strains
⊟Orthologs[edit | edit source]
COL:
—
N315:
—
NCTC8325:
—
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_0332
JH9:
SaurJH9_0323
JKD6008:
SAA6008_02037
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02118
TCH60:
—
TW20:
SATW20_03430
USA300_TCH1516:
USA300HOU_1988 (dnaD2)
VC40:
—
⊟Genome Viewer[edit | edit source]
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
Newman MTGWIKLHRKLLDSPIFQNEKLFKVFA---YCLMKASHKDHTQLVGRRVVELEKGQFVFG
USA300_FPR3757 MTGWISIDRSIQNHWLFKEKRTFSKFEAWIYLLMEANHSKAKVPIGNQIVTVERGQRLTS
*****.:.*.: : :*:::: *. * * **:*.*.. . :*.::* :*:** : .
Newman RKRASEELRLKESTVRDYIKLLENLGTIVVKSDNKFSVITVVNWAIYQSMEENSDSKNDN
USA300_FPR3757 ILTLSDLFNWSRFKVKTFLDLLESDGMLEVKTTSKYTLITIVNYDFYQSEQGRNQHQNDI
*: :. .. .*: ::.***. * : **: .*:::**:**: :*** : ..: :**
Newman KSTTNQQQMDNKWTTNQQQINTNKNVKNGDNVKNGENEKKKVTAFDFFQDNGFGFITPYN
USA300_FPR3757 KPTSKQHQSNINPTSKQHQTNTNNNDNKDNNEKNVNNEKKKTTAFDFFQDNGFGFITSYN
*.*::*:* : : *::*:* ***:* ::.:* ** :*****.***************.**
Newman LDDLNYYLDSFENDSDQIVTASLKIAKDRNKVTWGYAKSILNTWLNANLKSIEQVRAFEK
USA300_FPR3757 LDDLNYYLDSFENDSDEIVTASLKIAKDRNKVTWGYAKSILNTWLNANLKSIEQVRAFEK
****************:*******************************************
Newman QQLESKKQNYKPFVKQSKEKTPKWLTDSTRETKTPEVDENLEKDREAFIKRLNSKWE
USA300_FPR3757 QQLESKKQNYKPFVKQSKEKTPKWLTDSTRETKTPEVDENLEKDREAFIKRLNSKWE
*********************************************************