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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001241000
- symbol?: nanR
- synonym:
- description?: MurR/RpiR family transcriptional regulator
- MurR/RpiR family transcriptional regulator
- transcription regulator, putative
- helix-turn-helix domain, rpiR family protein
- putative transcriptional regulator
- RpiR family regulatory protein
- RpiR family transcriptional regulator
- Sialic acid utilization regulator, RpiR family
- SIS domain protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 1526552..1527352
- synteny block?: BlockID0007520
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0316 (rpiR)
08BA02176:
C248_0306
11819-97:
MS7_0307
6850:
RSAU_000263
71193:
ST398NM01_0330
ECT-R 2:
ECTR2_277
ED133:
SAOV_0270
ED98:
SAAV_0284
HO 5096 0412:
SAEMRSA15_02730
JH1:
SaurJH1_0307
JH9:
SaurJH9_0300
JKD6008:
SAA6008_00293 (rpiR)
JKD6159:
SAA6159_00293 (rpiR)
LGA251:
SARLGA251_02790
M013:
M013TW_0298
MRSA252:
SAR0314
MSHR1132:
SAMSHR1132_02910
MSSA476:
SAS0294
Mu3:
SAHV_0314
Mu50:
SAV0317
MW2:
MW0294
RF122:
SAB0254c
ST398:
SAPIG0330
T0131:
SAT0131_00321 (sirB)
TCH60:
HMPREF0772_10178
TW20:
SATW20_03220
USA300_TCH1516:
USA300HOU_0337
VC40:
SAVC_01335
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDY
N315 MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDY
NCTC8325 MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDY
Newman MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDY
USA300_FPR3757 MKFENRVQRYQHLFTKTDKRIVNYIRQNGYSDAFSTINSLAHAIGTSPATMTRFSHKLDY
************************************************************
COL ENFQDLKFNIQQEMTETVIENSPIIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRH
N315 ENFQDLKFNIQQEMTETVIENSPIIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRH
NCTC8325 ENFQDLKFNIQQEMTETVIENSPIIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRH
Newman ENFQDLKFNIQQEMTETVIENSPIIQRIHKYHQQIIQQTGEFIDNDIIQAFIDKLQSSRH
USA300_FPR3757 ENFQDLKFNIQQEMTETVIENSPIIQRIHKYHQQIIQQTGEFIDNDIIQTFIDKLQSSRH
*************************************************:**********
COL ILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISASLLSHSDMFIAMSNSGNTSE
N315 ILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISASLLSHSDMFIAMSNSGNTSE
NCTC8325 ILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISASLLSHSDMFIAMSNSGNTSE
Newman ILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISASLLSHSDMFIAMSNSGNTSE
USA300_FPR3757 ILFAGLGSSGLSATEFYYRMIRMGLKGNVTTDSHLMKISASLLSHSDMFIAMSNSGNTSE
************************************************************
COL LISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
N315 LISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
NCTC8325 LISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
Newman LISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
USA300_FPR3757 LISAAEVAKSHGAYVVAITNFEGSKLTDCADLVLLTTDQSRNTDHQFINTQIATLFLIDI
************************************************************
COL VSYHLLENTNLSQTYQHTKSIILDNK
N315 VSYHLLENTNLSQTYQHTKSIILDNK
NCTC8325 VSYHLLENTNLSQTYQHTKSIILDNK
Newman VSYHLLENTNLSQTYQHTKSIILDNK
USA300_FPR3757 VSYHLLENTNLSQTYQHTKSIILDNK
**************************