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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000942000
- symbol?: sodM
- synonym:
- description?: superoxide dismutase
- superoxide dismutase
- Superoxide dismutase [Mn/Fe] 2
- Fe/Mn family superoxide dismutase
- superoxide dismutase, putative
- manganese/iron superoxide dismutase
- Manganese superoxide dismutase
- Manganese superoxide dismutase, Superoxide dismutase
- Superoxide dismutase (Fe)
- Superoxide dismutase (Mn/Fe family)
- superoxide dismutase [Mn] (General stress protein 24)(GSP24)
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1203434..1203997
- synteny block?: BlockID0004780
- occurrence?: in 100% of 34 strains
sodM : exogenous ROS-inducible cambialistic superoxide dismutase SodM [1]
• A crystal structure is available: 6EX4
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0134 (sodM)
08BA02176:
C248_0122 (sodM)
11819-97:
MS7_0124 (sodM)
6850:
RSAU_000087 (sodA)
71193:
ST398NM01_0147
ECT-R 2:
ECTR2_89
ED133:
SAOV_0081 (sodA)
ED98:
SAAV_0101 (sodA1)
HO 5096 0412:
SAEMRSA15_01000 (sodM)
JH1:
SaurJH1_0124
JH9:
SaurJH9_0119
JKD6008:
SAA6008_00111 (sodM)
JKD6159:
SAA6159_00116 (sodM)
JSNZ:
JSNZ_000075
LGA251:
SARLGA251_01080 (sodM)
M013:
M013TW_0123
MRSA252:
SAR0135 (sodM)
MSHR1132:
SAMSHR1132_01090
MSSA476:
SAS0107
Mu3:
SAHV_0132 (sodM)
Mu50:
SAV0133 (sodM)
MW2:
MW0107 (sodM)
RF122:
SAB0072 (sodM)
ST398:
SAPIG0147
T0131:
SAT0131_00121
TCH60:
HMPREF0772_10365 (sodA)
TW20:
SATW20_01440 (sodM)
USA300_TCH1516:
USA300HOU_0145 (sodM)
VC40:
SAVC_00405
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANL
N315 MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANL
NCTC8325 MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANL
Newman MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANL
USA300_FPR3757 MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANL
************************************************************
COL DKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKA
N315 DKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKA
NCTC8325 DKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKA
Newman DKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKA
USA300_FPR3757 DKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKA
************************************************************
COL TTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMT
N315 TTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMT
NCTC8325 TTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMT
Newman TTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMT
USA300_FPR3757 TTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMT
************************************************************
COL AFWNIVNWKKVDELYQAAK
N315 AFWNIVNWKKVDELYQAAK
NCTC8325 AFWNIVNWKKVDELYQAAK
Newman AFWNIVNWKKVDELYQAAK
USA300_FPR3757 AFWNIVNWKKVDELYQAAK
*******************
- ↑ M W Valderas, M E Hart
Identification and characterization of a second superoxide dismutase gene (sodM) from Staphylococcus aureus.
J Bacteriol: 2001, 183(11);3399-407
[PubMed:11344148] [WorldCat.org] [DOI] (P p)Michail H Karavolos, Malcolm J Horsburgh, Eileen Ingham, Simon J Foster
Role and regulation of the superoxide dismutases of Staphylococcus aureus.
Microbiology (Reading): 2003, 149(Pt 10);2749-2758
[PubMed:14523108] [WorldCat.org] [DOI] (P p)Janina Treffon, Diego Chaves-Moreno, Silke Niemann, Dietmar Helmut Pieper, Thomas Vogl, Johannes Roth, Barbara C Kahl
Importance of superoxide dismutases A and M for protection of Staphylococcus aureus in the oxidative stressful environment of cystic fibrosis airways.
Cell Microbiol: 2020, 22(5);e13158
[PubMed:31895486] [WorldCat.org] [DOI] (I p)