PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000909000
• symbol^?: spa
• synonym:
• description^?: immunoglobulin G binding protein A

  descriptions from strain specific annotations:

  • immunoglobulin G binding protein A
  • peptidoglycan-binding protein LysM
  • immunoglobulin G binding protein A precursor
  • immunoglobulin G binding protein A precursor (protein A)
  • protein A
  • Protein A, von Willebrand factor binding protein Spa
  • cell wall anchor domain-containing protein
  • LPXTG-motif cell wall anchor domain-containing protein
  • pseudogene
• strand^?: -
• coordinates^?: 1175771..1177923
• synteny block^?: BlockID0004460
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0095 (spa)
N315:
SA0107 (spa)
NCTC8325:
SAOUHSC_00069
Newman:
NWMN_0055 (spa)
USA300_FPR3757:
SAUSA300_0113
04-02981:
SA2981_0112 (spa)
08BA02176:
C248_0099 (spa)
11819-97:
MS7_0103 (spa)
6850:
RSAU_000065 (spa)
71193:
ST398NM01_0122
ECT-R 2:
ECTR2_67
ED133:
SAOV_0058 (spa)
ED98:
SAAV_0078 (spa)
HO 5096 0412:
SAEMRSA15_00770 (spa)
JH1:
SaurJH1_0102
JH9:
SaurJH9_0098
JKD6008:
SAA6008_00089
JKD6159:
SAA6159_00094
LGA251:
SARLGA251_00860 (spa)
M013:
M013TW_0101
MRSA252:
SAR0114 (spa)
MSHR1132:
SAMSHR1132_00870
MSSA476:
SAS0085
Mu3:
SAHV_0110 (spa)
Mu50:
SAV0111 (spa)
MW2:
MW0084 (spa)
RF122:
SAB0050c (spa)
ST398:
SAPIG0122
T0131:
SAT0131_00096
TCH60:
HMPREF0772_10386 (spa)
TW20:
SATW20_01230 (spa)
USA300_TCH1516:
USA300HOU_0122 (spa)
VC40:
SAVC_00295

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ------------MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFY
  N315            ------------MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFY
  NCTC8325        ------------MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFY
  Newman          MMTLQIHTGGINLKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFY
  USA300_FPR3757  ------------MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFY
                              :***********************************************
  
  COL             QVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFNKDQQSAF
  N315            QVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFNKDQQSAF
  NCTC8325        QVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFNKDQQSAF
  Newman          QVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFNKDQQSAF
  USA300_FPR3757  QVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFNKDQQSAF
                  ************************************************************
  
  COL             YEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYE
  N315            YEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYE
  NCTC8325        YEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYE
  Newman          YEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYE
  USA300_FPR3757  YEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYE
                  ************************************************************
  
  COL             ILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEIL
  N315            ILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEIL
  NCTC8325        ILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEIL
  Newman          ILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEIL
  USA300_FPR3757  ILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEIL
                  ************************************************************
  
  COL             HLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHL
  N315            HLPNLN------------------------------------------------------
  NCTC8325        HLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHL
  Newman          HLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHL
  USA300_FPR3757  HLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHL
                  ******                                                      
  
  COL             PNLTEEQRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKE--------EDNNKPGKEDNN
  N315            ----EEQRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKE--------EDNKKPGKEDGN
  NCTC8325        PNLTEEQRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKEEDNNKPGKEDNNKPGKEDNN
  Newman          PNLTEEQRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKE--------EDNNKPGKEDNN
  USA300_FPR3757  PNLTEEQRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKE--------EDNNKPGKEDNN
                      ************************************        ***:******.*
  
  COL             KPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGK
  N315            KPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNNKPGKEDGNKPGKEDNNKPGKEDGNKPGK
  NCTC8325        KPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGK
  Newman          KPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGK
  USA300_FPR3757  KPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGKEDNKKPGKEDGNKPGK
                  ******.********:***************:***************:************
  
  COL             EDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKK
  N315            EDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKK
  NCTC8325        EDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKK
  Newman          EDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKK
  USA300_FPR3757  EDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKK
                  ************************************************************
  
  COL             QPANHADANKAQALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL
  N315            QPANHADANKAQALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL
  NCTC8325        QPANHADANKAQALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL
  Newman          QPANHADANKAQALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL
  USA300_FPR3757  QPANHADANKAQALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL
                  ************************************************