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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000032000
- symbol?: walR
- synonym:
- description?: DNA-binding response regulator
- DNA-binding response regulator
- DNA-binding response regulator YycF
- response regulator
- response regulator protein
- response regulator transcription factor
- two-component response regulator
- two-component response regulator VicR, putative
- transcriptional regulatory protein WalR
- alkaline phosphatase synthesis transcriptional regulatory proteinphoP
- response regulator receiver
- response regulator VicR
- response regulator WalR (YycF/VicR)
- transcriptional regulator WalR
- Two-component response regulator SA14-24
- two component transcriptional regulator
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 31357..32064
- synteny block?: BlockID0000290
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0018 (vicR)
08BA02176:
C248_0021 (yycF)
11819-97:
MS7_0020 (walR)
6850:
RSAU_000020 (vicR)
71193:
ST398NM01_0020
ECT-R 2:
ECTR2_20
ED133:
SAOV_0020 (yycF)
ED98:
SAAV_0022 (yycF)
HO 5096 0412:
SAEMRSA15_00180 (yycF)
JH1:
SaurJH1_0018
JH9:
SaurJH9_0018
JKD6008:
SAA6008_00018 (walR)
JKD6159:
SAA6159_00018 (walR)
LGA251:
SARLGA251_00180 (yycF)
M013:
M013TW_0021
MRSA252:
SAR0018 (yycF)
MSHR1132:
SAMSHR1132_00190
MSSA476:
SAS0018
Mu3:
SAHV_0018 (vicR)
Mu50:
SAV0018 (vicR)
MW2:
MW0018 (vicR)
RF122:
SAB0018 (yycF)
ST398:
SAPIG0020
T0131:
SAT0131_00020
TCH60:
HMPREF0772_10450
TW20:
SATW20_00180 (yycF)
USA300_TCH1516:
USA300HOU_0018 (yycF)
VC40:
SAVC_00090
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL --MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPG
N315 MQMARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPG
NCTC8325 --MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPG
Newman MQMARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPG
USA300_FPR3757 --MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPG
**********************************************************
COL RDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR
N315 RDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR
NCTC8325 RDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR
Newman RDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR
USA300_FPR3757 RDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR
************************************************************
COL RHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMT
N315 RHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMT
NCTC8325 RHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMT
Newman RHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMT
USA300_FPR3757 RHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMT
************************************************************
COL REHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE
N315 REHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE
NCTC8325 REHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE
Newman REHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE
USA300_FPR3757 REHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE
*******************************************************