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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS11440 [old locus tag: SACOL2174 ]
  • pan locus tag?: SAUPAN005579000
  • symbol: SACOL_RS11440
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS11440 [old locus tag: SACOL2174 ]
  • symbol: SACOL_RS11440
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2256018..2256257
  • length: 240
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2256018..2256257) NCBI
  • BioCyc: SACOL_RS11440 BioCyc
  • MicrobesOnline: see SACOL2174

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGGCTAACAATCATAACCAAAACGGACAAGACTCTACACAACAAGTGATTAATTTTTTA
    AAAGTATTTAAATGGAGAATCGTTGGTTTCCTAGCGTTTCTATTAATCGCGATATTATTC
    TTAACGTTAGGTTTTTGGAAAACAGTACTTATCATCGTTTTATGTTTAATTGGTGTAGGT
    ATTGGGTATATGAAAGACCGTAAGCAAGATTTTATGAATTTTTTAAATCGATGGAGTTAA
    60
    120
    180
    240

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS11440 [old locus tag: SACOL2174 ]
  • symbol: SACOL_RS11440
  • description: hypothetical protein
  • length: 79
  • theoretical pI: 10.6864
  • theoretical MW: 9222.96
  • GRAVY: 0.508861

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein modification and repair apolipoprotein N-acyltransferase (TIGR00546; EC 2.3.1.-; HMM-score: 15.1)
  • TheSEED: see SACOL2174
  • PFAM:
    no clan defined DUF2273; Small integral membrane protein (DUF2273) (PF10031; HMM-score: 50.9)
    and 7 more
    TMEM82; Transmembrane protein 82 (PF15816; HMM-score: 16.1)
    TrbC_VirB2 (CL0690) TrbC; TrbC/VIRB2 pilin (PF04956; HMM-score: 14.1)
    no clan defined DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 13.5)
    DUF2207_C; Predicted membrane protein (DUF2207) C-terminal domain (PF20990; HMM-score: 13.3)
    DUF4381; Domain of unknown function (DUF4381) (PF14316; HMM-score: 12.3)
    Dynamin-like_hel_bact; Bacterial dynamin-like protein, helical domain (PF21808; HMM-score: 11.7)
    DUF2530; Protein of unknown function (DUF2530) (PF10745; HMM-score: 10.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9994
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0006
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00169
    • TAT(Tat/SPI): 0.000218
    • LIPO(Sec/SPII): 0.018319
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MANNHNQNGQDSTQQVINFLKVFKWRIVGFLAFLLIAILFLTLGFWKTVLIIVLCLIGVGIGYMKDRKQDFMNFLNRWS

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2174
  • protein localization: see SACOL2174
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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