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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus COL

locus tag: SACOL_RS07025 [old locus tag: SACOL1380 ]

pan locus tag^?: SAUPAN003720000

symbol: SACOL_RS07025

pan gene symbol^?: —

synonym:
product: membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SACOL_RS07025 [old locus tag: SACOL1380 ]
symbol: SACOL_RS07025
product: membrane protein
replicon: chromosome
strand: +
coordinates: 1383014..1383481
length: 468
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_002951 (1383014..1383481) NCBI
BioCyc: SACOL_RS07025 BioCyc
MicrobesOnline: see SACOL1380

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
361
421
GTGCTCTATTTAATATTTTCAATCATTGTAGCTTTATTTATGGGAACTATAGTTATAGTT
ATTCGTATGAAAGCTCAAAATTATCCGGTAAATGAGAAAAAAATAGTTTTGCCACCGTTT
TTTATGGCGACCGGTGCATTGATGTACGTCGTTCCATATTTTAGGCTAACAGGATCGGAA
ATGCTAGAAGCCTTTATAATTGGTTTGCTTTTTTCTACAGTTCTAATTTGGACTTCTCGA
TTTGAAGTCAAAGGTACAGAAATTTATATGAAACGATCTAAAGCATTTCCAGTTATTTTG
ATTTCATTACTTATCATTCGTACTGTGATGAAAATATTCATTAGTAATGAAATAGATCCT
GGAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCA
GCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAA
60
120
180
240
300
360
420
468

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SACOL_RS07025 [old locus tag: SACOL1380 ]
symbol: SACOL_RS07025
description: membrane protein
length: 155
theoretical pI: 10.3894
theoretical MW: 17867.9
GRAVY: 0.856774

⊟Function[edit | edit source]

TIGRFAM:
Metabolism Transport and binding proteins Cations and iron carrying compounds multicomponent Na+:H+ antiporter (TIGR00942; HMM-score: 13.5)
TheSEED: see SACOL1380
⊞PFAM:
no clan defined DUF1453; CcdC protein (PF07301; HMM-score: 201.6)
and 2 more
NADP_Rossmann (CL0063) DUF6094; Uncharacterised methyltransferase family (DUF6094) (PF19587; HMM-score: 10.9)
no clan defined DUF2157; Predicted membrane protein (DUF2157) (PF09925; HMM-score: 10.2)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
⊞
DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9999
- Cell wall & surface Score: 0
- Extracellular Score: 0.0001
LocateP:
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.045686
- TAT(Tat/SPI): 0.00047
- LIPO(Sec/SPII): 0.010404
predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

GI: 446888886 NCBI
RefSeq: WP_000966142 NCBI
UniProt: see SACOL1380

⊟Protein sequence[edit | edit source]

MLYLIFSIIVALFMGTIVIVIRMKAQNYPVNEKKIVLPPFFMATGALMYVVPYFRLTGSEMLEAFIIGLLFSTVLIWTSRFEVKGTEIYMKRSKAFPVILISLLIIRTVMKIFISNEIDPGELGGMFFLLAFCMIVPWRAAMLYKYKKLKKTLIN

⊟Experimental data[edit | edit source]

experimentally validated: see SACOL1380
protein localization: see SACOL1380
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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