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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1241 [new locus tag: SAUSA300_RS06740 ]
  • pan locus tag?: SAUPAN003720000
  • symbol: SAUSA300_1241
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1241 [new locus tag: SAUSA300_RS06740 ]
  • symbol: SAUSA300_1241
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1359250..1359678
  • length: 429
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGGGAACTATAGTTATAGTTATTCGTATGAAAGCTCAAAATTATCCGGTAAATGAGAAA
    AAAATAGTTTTGCCACCGTTTTTTATGGCGACCGGTGCATTGATGTACGTCGTTCCATAT
    TTTAGGCTAACAGGATCGGAAATGCTAGAAGCCTTTATAATTGGTTTGCTTTTTTCTACA
    GTTCTAATTTGGACTTCTCGATTTGAAGTCAAAGGTACAGAAATTTATATGAAACGATCT
    AAAGCATTTCCAGTTATTTTGATTTCATTACTTATCATTCGTACTGTGATGAAAATATTC
    ATTAGTAATGAAATAGATCCTGGAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGT
    ATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTA
    ATCAATTAA
    60
    120
    180
    240
    300
    360
    420
    429

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1241 [new locus tag: SAUSA300_RS06740 ]
  • symbol: SAUSA300_1241
  • description: hypothetical protein
  • length: 142
  • theoretical pI: 10.4632
  • theoretical MW: 16343
  • GRAVY: 0.679577

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds multicomponent Na+:H+ antiporter (TIGR00942; HMM-score: 14.4)
  • TheSEED  :
    • Uncharacterized membrane protein CcdC
  • PFAM:
    no clan defined DUF1453; Protein of unknown function (DUF1453) (PF07301; HMM-score: 188.8)
    and 2 more
    DUF4396; Domain of unknown function (DUF4396) (PF14342; HMM-score: 10.5)
    DUF4181; Domain of unknown function (DUF4181) (PF13789; HMM-score: 9.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001158
    • TAT(Tat/SPI): 0.000143
    • LIPO(Sec/SPII): 0.003015
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGTIVIVIRMKAQNYPVNEKKIVLPPFFMATGALMYVVPYFRLTGSEMLEAFIIGLLFSTVLIWTSRFEVKGTEIYMKRSKAFPVILISLLIIRTVMKIFISNEIDPGELGGMFFLLAFCMIVPWRAAMLYKYKKLKKTLIN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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