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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01125 [old locus tag: SACOL0220 ]
  • pan locus tag?: SAUPAN001105000
  • symbol: SACOL_RS01125
  • pan gene symbol?: hmp
  • synonym:
  • product: nitric oxide dioxygenase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS01125 [old locus tag: SACOL0220 ]
  • symbol: SACOL_RS01125
  • product: nitric oxide dioxygenase
  • replicon: chromosome
  • strand: -
  • coordinates: 260532..261677
  • length: 1146
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (260532..261677) NCBI
  • BioCyc: SACOL_RS01125 BioCyc
  • MicrobesOnline: see SACOL0220

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGCTTACAGAACAAGAGAAAGACATTATCAAACAAACGGTGCCTTTACTTAAAGAGAAA
    GGGACAGAAATTACGTCAATCTTTTATCCAAAAATGTTTAAAGCGCATCCTGAACTTTTA
    AACATGTTTAATCAAACGAACCAAAAACGAGGCATGCAATCTTCAGCATTAGCACAAGCT
    GTAATGGCCGCAGCGGTTAATATCGATAACTTAAGTGTTATTAAACCAGTCATTATGCCA
    GTCGCATATAAACACTGCGCACTACAAGTTTATGCTGAACATTATCCAATTGTGGGGAAA
    AATTTATTAAAAGCCATTCAAGACGTGACAGGATTAGAAGAAAATGACCCTGTCATTCAA
    GCTTGGGCAAAAGCATATGGCGTTATTGCGGATGTGTTCATCCAAATTGAAAAAGAAATT
    TATGATCAAATGATGTGGATTGGTTTTAAACCATTCAAAATTACCAATATTAAACAAGAA
    TCTGAAGACATTAAATCATTTACAGTTGAAACTGAAGAATATGACTTTAGTGAATTTACA
    CCAGGCCAATACATCACAGTTGATGTTTCTAGTGATAAACTTCCATATAGAGCTAAACGT
    CACTATTCTATCGTATCAGGTGAAAAAAACCATTTAACTTTTGGCGTTAAACGTGATGTC
    ACAACAGAACATGAAGGCGAAGTTTCAACAATTTTACACGATGAGATTAAAGAAGGCGAT
    ATGATTAATTTAGCTGCGCCTGTAGGTGGATTCGTATTAGAGAATACGACTGAACCACAA
    CTTTTCTTAGGTTCAGGTATTGGTGTTACACCTTTAGTAGCTATGTATGAAGCTGCCTCT
    GCCAAAGGTTTAGATACACAGATGGTTCAAGTTGCTGAAAATGAACAACATTTACCTTTC
    AAAGACAACTTCAACAGTATCGCAAGCCATCATGACAACGCTAAATTATATACACACTTA
    AAAGATAAACAAGGCTATATTGGTGCTGAAGAATTACAAGTATTTTTAGCAAATAAACCT
    GAAATTTATATCTGTGGTGGTACAAAATTCTTACAATCTATGATCGAAGCACTTAAATCT
    TTAAATTACGATATGGATCGCGTACACTACGAAACATTTATTCCAAGACTAAGCGTTGCA
    GTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1146

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS01125 [old locus tag: SACOL0220 ]
  • symbol: SACOL_RS01125
  • description: nitric oxide dioxygenase
  • length: 381
  • theoretical pI: 5.16615
  • theoretical MW: 42906.8
  • GRAVY: -0.212861

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Energy metabolism Other phenylacetate-CoA oxygenase/reductase, PaaK subunit (TIGR02160; HMM-score: 56.5)
    and 1 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit (TIGR01941; EC 1.6.5.-; HMM-score: 26.5)
  • TheSEED: see SACOL0220
  • ⊞PFAM:
    Globin (CL0090) Globin; Globin (PF00042; HMM-score: 49.9)
    and 4 more
    Hybrid (CL0105) FAD_binding_6; Oxidoreductase FAD-binding domain (PF00970; HMM-score: 34.7)
    NAD_Ferredoxin (CL0091) NAD_binding_1; Oxidoreductase NAD-binding domain (PF00175; HMM-score: 24.9)
    Hybrid (CL0105) AstE_AspA_hybrid; AstE/AspA barrel-sandwich hybrid domain (PF04952; HMM-score: 14.7)
    Globin (CL0090) Protoglobin; Protoglobin (PF11563; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9628
    • Cytoplasmic Membrane Score: 0.0168
    • Cell wall & surface Score: 0.0011
    • Extracellular Score: 0.0193
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00738
    • TAT(Tat/SPI): 0.001641
    • LIPO(Sec/SPII): 0.000377
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLTEQEKDIIKQTVPLLKEKGTEITSIFYPKMFKAHPELLNMFNQTNQKRGMQSSALAQAVMAAAVNIDNLSVIKPVIMPVAYKHCALQVYAEHYPIVGKNLLKAIQDVTGLEENDPVIQAWAKAYGVIADVFIQIEKEIYDQMMWIGFKPFKITNIKQESEDIKSFTVETEEYDFSEFTPGQYITVDVSSDKLPYRAKRHYSIVSGEKNHLTFGVKRDVTTEHEGEVSTILHDEIKEGDMINLAAPVGGFVLENTTEPQLFLGSGIGVTPLVAMYEAASAKGLDTQMVQVAENEQHLPFKDNFNSIASHHDNAKLYTHLKDKQGYIGAEELQVFLANKPEIYICGGTKFLQSMIEALKSLNYDMDRVHYETFIPRLSVAV

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL0220
  • protein localization: see SACOL0220
  • quantitative data / protein copy number per cell: see SACOL0220
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for N315

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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