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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1986 [new locus tag: SACOL_RS10380 ]
  • pan locus tag?: SAUPAN004960000
  • symbol: SACOL1986
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1986 [new locus tag: SACOL_RS10380 ]
  • symbol: SACOL1986
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2049703..2050104
  • length: 402
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGACAAGTTATGAAGAAGAAACTGATTATCGTAACGTTCCAAGAGAATTACTAGATAAC
    AATATACCTATGGGAAGAGGCATGATTAAATGGGCTCCTTTTGCAACATTACCCGAACAA
    TTCGAAACGATTCAACAATACATTATCGACCAAAACAAAATTACACGTCCTGTATTATCA
    GATGATCAATTGGCTGAGCTAAACATTCGGCTACACGAGGCGCTACAATATGCCCAACCT
    GTAGAAGTTAAATTTTATAATAATGGCTTTGTAGATTCAGTACGCTTAACCATTTATCGT
    ATTGATGCTATTAATTATGAAATTGATGGTTATGTTTACAATCAGCAACAACGTCAAAAA
    ATTTCTATCTTTGATATCTTAGATATTGTCTTGTTACCTTAA
    60
    120
    180
    240
    300
    360
    402

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1986 [new locus tag: SACOL_RS10380 ]
  • symbol: SACOL1986
  • description: hypothetical protein
  • length: 133
  • theoretical pI: 4.28823
  • theoretical MW: 15717.7
  • GRAVY: -0.378947

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01107859: hypothetical protein
  • PFAM:
    WYL (CL0654) YolD; YolD-like protein (PF08863; HMM-score: 89)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8168
    • Cytoplasmic Membrane Score: 0.157
    • Cell wall & surface Score: 0.0006
    • Extracellular Score: 0.0257
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009314
    • TAT(Tat/SPI): 0.0003
    • LIPO(Sec/SPII): 0.000564
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTSYEEETDYRNVPRELLDNNIPMGRGMIKWAPFATLPEQFETIQQYIIDQNKITRPVLSDDQLAELNIRLHEALQYAQPVEVKFYNNGFVDSVRLTIYRIDAINYEIDGYVYNQQQRQKISIFDILDIVLLP

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: Cytoplasmic [1]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • ⊞regulator: LexA (repression) regulon

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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