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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004960000
- symbol?: —
- synonym:
- description?: YolD-like family protein
- YolD-like family protein
- YolD-like protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5147091..5159697
- synteny block?: BlockID0038640
- occurrence?: in 100% of 34 strains
yolD (umuD) : error-prone DNA polymerase V small subunit [1]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1880
08BA02176:
C248_2010
11819-97:
MS7_1958
6850:
RSAU_001818
71193:
ST398NM01_2026
ECT-R 2:
ECTR2_1795
ED133:
SAOV_2025
ED98:
SAAV_1990
HO 5096 0412:
SAEMRSA15_18390b (SAEMRSA15_18390)
JH1:
SaurJH1_2012
JH9:
SaurJH9_1979
JKD6008:
SAA6008_01944 (yolD)
JKD6159:
SAA6159_01854 (yolD)
JSNZ:
JSNZ_001957
LGA251:
SARLGA251_18070
M013:
M013TW_1960
MRSA252:
SAR2015
MSHR1132:
SAMSHR1132_17670
MSSA476:
SAS1846
Mu3:
SAHV_1907
Mu50:
SAV1922
MW2:
MW1863
RF122:
SAB1859
ST398:
SAPIG2026
T0131:
SAT0131_02053
TCH60:
HMPREF0772_11218
TW20:
SATW20_19170
USA300_TCH1516:
USA300HOU_1926
VC40:
SAVC_08875
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTSYEEETDYRNVPRELLDNNIPMGRGMIKWAPFATLPEQFETIQQYIIDQNKITRPVLS
N315 MTSYEEETDYRNVPRELLDNNIPMGRGMIKWAPFATLPEQFETIQQYIIDQNKITRPVLS
NCTC8325 MTSYEEETDYRNVPRELLDNNIPMGRGMIKWAPFATLPEQFETIQQYIIDQNKITRPVLS
Newman MTSYEEETDYRNVPRELLDNNIPMGRGMIKWAPFATLPEQFETIQQYIIDQNKITRPVLS
USA300_FPR3757 MTSYEEETDYRNVPRELLDNNIPMGRGMIKWAPFATLPEQFETIQQYIIDQNKITRPVLS
************************************************************
COL DDQLAELNIRLHEALQYAQPVEVKFYNNGFVDSVRLTIYRIDAINYEIDGYVYNQQQRQK
N315 DDQLAELNIRLHEALQYAQPVEVKFYNNGFVDSVRLTIYRIDAINYEIDGYVYNQQQRQK
NCTC8325 DDQLAELNIRLHEALQYAQPVEVKFYNNGFVDSVRLTIYRIDAINYEIDGYVYNQQQRQK
Newman DDQLAELNIRLHEALQYAQPVEVKFYNNGFVDSVRLTIYRIDAINYEIDGYVYNQQQRQK
USA300_FPR3757 DDQLAELNIRLHEALQYAQPVEVKFYNNGFVDSVRLTIYRIDAINYEIDGYVYNQQQRQK
************************************************************
COL ISIFDILDIVLLP
N315 ISIFDILDIVLLP
NCTC8325 ISIFDILDIVLLP
Newman ISIFDILDIVLLP
USA300_FPR3757 ISIFDILDIVLLP
*************
- ↑ Kam Pou Ha, Andrew M Edwards
DNA Repair in Staphylococcus aureus.
Microbiol Mol Biol Rev: 2021, 85(4);e0009121
[PubMed:34523959] [WorldCat.org] [DOI] (I p)Kaiying Cheng, Yukang Sun, Huan Yu, Yingxuan Hu, Yini He, Yuanyuan Shen
Staphylococcus aureus SOS response: Activation, impact, and drug targets.
mLife: 2024, 3(3);343-366
[PubMed:39359682] [WorldCat.org] [DOI] (I e)