From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0568 [new locus tag: SACOL_RS02950 ]
  • pan locus tag?: SAUPAN002288000
  • symbol: SACOL0568
  • pan gene symbol?: mcsA
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0568 [new locus tag: SACOL_RS02950 ]
  • symbol: SACOL0568
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 588476..589042
  • length: 567
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    GTGCTTTGTGAAAATTGTCAACTTAATGAAGCGGAATTAAAAGTTAAAGTTACAAGTAAA
    AATAAAACAGAAGAAAAAATGGTGTGTCAAACTTGTGCTGAGGGACACCATCCGTGGAAT
    CAAGCTAATGAACAACCTGAATATCAAGAACATCAAGATAATTTCGAAGAAGCATTTGTT
    GTTAAGCAAATTTTACAACATTTAGCTACGAAACATGGAATTAATTTTCAAGAAGTAGCG
    TTTAAAGAAGAAAAACGTTGCCCATCATGTCATATGACTTTGAAAGATATTGCACATGTT
    GGTAAATTTGGGTGTGCTAATTGTTATGCAACATTTAAAGATGACATCATTGATATCGTC
    CGCAGAGTTCAAGGTGGACAATTTGAGCACGTTGGAAAGACACCACATTCTTCACATAAA
    AAGATAGCTTTAAAGCGAAAAATCGAAGAAAAGAATGAATATTTGAAAAAACTTATTGAA
    ATCCAAGATTTTGAGGAAGCAGCCATTGTTAGAGATGAAATTAAAGCACTAAAAGCTGAG
    AGTGAGGTGCAACATGATGACGCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    567

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0568 [new locus tag: SACOL_RS02950 ]
  • symbol: SACOL0568
  • description: hypothetical protein
  • length: 188
  • theoretical pI: 6.43087
  • theoretical MW: 21702.5
  • GRAVY: -0.752128

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit B (TIGR00631; EC 3.1.25.-; HMM-score: 12.9)
    Metabolism Transport and binding proteins Cations and iron carrying compounds sodium/hydrogen antiporter (TIGR00844; HMM-score: 11.5)
  • TheSEED  :
    • Protein-arginine kinase activator protein McsA
    Protein Metabolism Protein degradation Proteolysis in bacteria, ATP-dependent  Nucleotide excision repair protein, with UvrB/UvrC motif
  • PFAM:
    no clan defined UVR; UvrB/uvrC motif (PF02151; HMM-score: 22.7)
    Zn_Beta_Ribbon (CL0167) OrfB_Zn_ribbon; Putative transposase DNA-binding domain (PF07282; HMM-score: 18.4)
    and 8 more
    Zn_Tnp_IS1595; Transposase zinc-ribbon domain (PF12760; HMM-score: 16.1)
    no clan defined PHF5; PHF5-like protein (PF03660; HMM-score: 13.1)
    Zn_Beta_Ribbon (CL0167) Elf1; Transcription elongation factor Elf1 like (PF05129; HMM-score: 10.5)
    zf-FPG_IleRS; Zinc finger found in FPG and IleRS (PF06827; HMM-score: 9.8)
    Zn-ribbon_8; Zinc ribbon domain (PF09723; HMM-score: 8.6)
    Multiheme_cytos (CL0317) Cytochrom_CIII; Class III cytochrome C family (PF02085; HMM-score: 8.1)
    Zn_Beta_Ribbon (CL0167) zinc-ribbons_6; zinc-ribbons (PF07191; HMM-score: 7.9)
    zf-FYVE-PHD (CL0390) FYVE; FYVE zinc finger (PF01363; HMM-score: 6.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.020967
    • TAT(Tat/SPI): 0.000743
    • LIPO(Sec/SPII): 0.010674
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLCENCQLNEAELKVKVTSKNKTEEKMVCQTCAEGHHPWNQANEQPEYQEHQDNFEEAFVVKQILQHLATKHGINFQEVAFKEEKRCPSCHMTLKDIAHVGKFGCANCYATFKDDIIDIVRRVQGGQFEHVGKTPHSSHKKIALKRKIEEKNEYLKKLIEIQDFEEAAIVRDEIKALKAESEVQHDDA

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Cytoplasmic [1] [2] [3]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • data available for N315

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Kristina Hempel, Florian-Alexander Herbst, Martin Moche, Michael Hecker, Dörte Becher
    Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions.
    J Proteome Res: 2011, 10(4);1657-66
    [PubMed:21323324] [WorldCat.org] [DOI] (I p)
  3. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL0568&oldid=98668"