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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1440 [new locus tag: SA_RS08120 ]
  • pan locus tag?: SAUPAN004208000
  • symbol: SA1440
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1440 [new locus tag: SA_RS08120 ]
  • symbol: SA1440
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1642307..1643575
  • length: 1269
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAAGACAATAGAAGAGATTAAATCAACTCCTAAAACAGTTATGAAGAAACCAGAATTA
    TTAGCACCTGCTGGAAACTTAGAAAAGTTAAAAATAGCAGTACATTATGGCGCTGATGCC
    GTATTTTTAGGTGGTCAAGAATATGGATTACGTTCAAATGCTGATAATTTCACGATGGAA
    GAAATAGCTGAAGGTGTTGAATTTGCGAACCGTTACGGTGCCAAAATTTATGTTACGACA
    AATATTATTGCACATGATGAGAATATTGAAGGTCTAGAATCATATTTGCGTAATTTGGAA
    AAGACTGGTGCGACAGGTATCATTGTTGCAGATCCTTTAATTATCGAAACATGTAAAGAA
    GTTGCGCCAAAACTTGAAATTCATTTATCTACTCAACAATCACTTTCTAATTACAAAGCT
    GTAGAATATTGGAAAGAAGAAGGATTGGATCGTGTTGTATTAGCACGTGAGACCGGCGCG
    ATGGAAATGCGTGAAATGAAGGAAAAAGTAGATATTGAAATCGAAGCATTTATTCATGGT
    GCTATGTGTATCGCCTATTCAGGTAGATGTACATTAAGTAATCATATGACTGCAAGGGAT
    TCCAACAGAGGCGGTTGCTGTCAAAGTTGCCGTTGGGATTATGAATTATTAGAAGTTGAT
    GATAATGGTGAACTTGATGTATTTTATAATCAAGGTGAAGTTACACCGTTTGCGATGAGT
    CCTAAAGATTTAAAATTAATCGAATCAATTCCTCAAATGATGGATATTGGTGTGGACTCA
    TTAAAAATTGAAGGACGTATGAAGTCAATTCATTATATTGCAACAGTTGTCTCAGTATAT
    CGTAAAGTCATTGATGCGTATGCGGCAGATCCTGACAACTTTAAGATTAATCCGGAATGG
    TTAATTGAGTTAGATAAATGTGCAAATAGAGACACTGCACCAGCATTCTTTGAGGGAACA
    CCTGGTTATGAAGAACAGATGTTTGGTCAACAACAATCTAAAAAATCACCATTTGATTTT
    TGTGGTTTGGTATTAGACTATAATGAAGATACAAAAATTGCGACTATTCAACAACGAAAT
    AACTTTAAACCAGGTCAAGAAATAGAATTCTTTGGTCCAGAAATTGAAACATTTACACAA
    GTAGTAGAAGCAATTTATGATGAAGAAGGTAACAGCTTAGACGCGGCGCGCCATCCATTA
    CAAATCGTTCAAATTAAAGTGGATCGCCCGATATATCCAAACAACATGATGAGAAAGGAA
    ATTGGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1269

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1440 [new locus tag: SA_RS08120 ]
  • symbol: SA1440
  • description: hypothetical protein
  • length: 422
  • theoretical pI: 4.49587
  • theoretical MW: 47654.8
  • GRAVY: -0.38128

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • tRNA 5-hydroxyuridine(34) synthetase TrhP
  • PFAM:
    no clan defined Peptidase_U32; Peptidase family U32 (PF01136; HMM-score: 286.7)
    and 3 more
    Peptidase_U32_C; Peptidase family U32 C-terminal domain (PF16325; HMM-score: 88.2)
    TIM_barrel (CL0036) Radical_SAM; Radical SAM superfamily (PF04055; HMM-score: 15.7)
    no clan defined PucR; Purine catabolism regulatory protein-like family (PF07905; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005131
    • TAT(Tat/SPI): 0.000485
    • LIPO(Sec/SPII): 0.000603
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKTGATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLEVDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATVVSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSKKSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNSLDAARHPLQIVQIKVDRPIYPNNMMRKEIG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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