PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA0465 [new locus tag: SA_RS02680 ]
• pan locus tag^?: SAUPAN002248000
• symbol: SA0465
• pan gene symbol^?: divIC
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA0465 [new locus tag: SA_RS02680 ]
• symbol: SA0465
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 537710..538102
• length: 393
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1123256 NCBI
• RefSeq: NP_373717 NCBI
• BioCyc: see SA_RS02680
• MicrobesOnline: 102743 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

• 1
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  ATGAAAAATAAAGTAGAACATATAGAAAATCAGTACACGTCGCAAGAGAACAAGAAAAAA
  CAACGTCAAAAAATGAAAATGCGTGTTGTTCGTAGGCGTATTACAGTATTTGCGGGCGTA
  TTACTTGCGATAATTGTTGTTTTATCAATCTTGCTTGTTGTCCAAAAACATCGCAATGAT
  ATTGATGCACAGGAGCGAAAAGCGAAAGAAGCACAGTTTCAAAAGCAACAAAATGAAGAA
  ATTGCGTTAAAAGAAAAGTTGAATAATCTGAATGACAAAGATTACATTGAAAAAATTGCG
  CGTGATGATTATTACTTAAGCAACAAAGGTGAAGTGATTTTTAGGTTGCCAGAAGACAAA
  GATTCGTCTAGCTCAAAATCTTCGAAAAAATAA
  60
  120
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  393
  

⊟Protein

⊟General

• locus tag: SA0465 [new locus tag: SA_RS02680 ]
• symbol: SA0465
• description: hypothetical protein
• length: 130
• theoretical pI: 10.4495
• theoretical MW: 15347.6
• GRAVY: -0.941538

⊟Function

• TIGRFAM:
  Cellular processes Cellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 22)
  and 4 more
  cytochrome c oxidase accessory protein CcoG (TIGR02745; HMM-score: 16.6)
  TIGR03943 family protein (TIGR03943; HMM-score: 13.3)
  Genetic information processing Protein fate Protein folding and stabilization cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 12.5)
  Metabolism Energy metabolism Electron transport cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 12.5)
• TheSEED  :
  • Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage
  Bacterial Cell Division  Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage
  and 2 more
  Cell division-ribosomal stress proteins cluster  Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage
  RP Bacterial Cell Division  Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage
• PFAM:
  FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 66.4)
  and 23 more
  FtsL; Cell division protein FtsL (PF04999; HMM-score: 15.8)
  no clan defined Gemini_AL2; Geminivirus AL2 protein (PF01440; HMM-score: 15.5)
  EphA2_TM; Ephrin type-A receptor 2 transmembrane domain (PF14575; HMM-score: 15.2)
  DUF1510; Protein of unknown function (DUF1510) (PF07423; HMM-score: 15)
  SIT; SHP2-interacting transmembrane adaptor protein, SIT (PF15330; HMM-score: 14.8)
  DUF3671; Protein of unknown function (PF12420; HMM-score: 14.5)
  LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 13.3)
  Protocadherin; Protocadherin (PF08374; HMM-score: 13.2)
  DUF1191; Protein of unknown function (DUF1191) (PF06697; HMM-score: 13.1)
  Peptidase_MA (CL0126) Peptidase_M50; Peptidase family M50 (PF02163; HMM-score: 12.7)
  no clan defined INSIG; Insulin-induced protein (INSIG) (PF07281; HMM-score: 11.9)
  GPCR_A (CL0192) 7tm_1; 7 transmembrane receptor (rhodopsin family) (PF00001; HMM-score: 10.8)
  Frizzled; Frizzled/Smoothened family membrane region (PF01534; HMM-score: 10.5)
  MFS (CL0015) TLC; TLC ATP/ADP transporter (PF03219; HMM-score: 10.2)
  no clan defined TraG_N; TraG-like protein, N-terminal region (PF07916; HMM-score: 9.8)
  SNARE-fusion (CL0445) Synaptobrevin; Synaptobrevin (PF00957; HMM-score: 9.7)
  GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 9.1)
  no clan defined Baculo_11_kDa; Baculovirus 11 kDa family (PF06143; HMM-score: 9)
  DUF2500; Protein of unknown function (DUF2500) (PF10694; HMM-score: 8.7)
  O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 8.5)
  no clan defined UPF0239; Uncharacterised protein family (UPF0239) (PF06783; HMM-score: 8.2)
  DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 7.2)
  Oxa1 (CL0376) 60KD_IMP; 60Kd inner membrane protein (PF02096; HMM-score: 6.7)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cellwall
  • Cytoplasmic Score: 0.01
  • Cytoplasmic Membrane Score: 0.53
  • Cellwall Score: 8.75
  • Extracellular Score: 0.7
  • Internal Helix: 1
• LocateP: N-terminally anchored (No CS)
  • Prediction by SwissProt Classification: Membrane
  • Pathway Prediction: Sec-(SPI)
  • Intracellular possibility: 0.17
  • Signal peptide possibility: -0.5
  • N-terminally Anchored Score: 4
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.017308
  • TAT(Tat/SPI): 0.000593
  • LIPO(Sec/SPII): 0.005031
• predicted transmembrane helices (TMHMM): 1

⊟Accession numbers

• GI: 15926184 NCBI
• RefSeq: NP_373717 NCBI
• UniProt: A0A0H3JNV4 UniProt

⊟Protein sequence

• MKNKVEHIENQYTSQENKKKQRQKMKMRVVRRRITVFAGVLLAIIVVLSILLVVQKHRNDIDAQERKAKEAQFQKQQNEEIALKEKLNNLNDKDYIEKIARDDYYLSNKGEVIFRLPEDKDSSSSKSSKK

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: rplY > pth > mfd > SA0462 > SA0463 > SA0464 > SA0465 > SA0466

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications