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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS12690 [old locus tag: NWMN_2199 ]
  • pan locus tag?: SAUPAN005767000
  • symbol: NWMN_RS12690
  • pan gene symbol?: ssaA
  • synonym:
  • product: CHAP domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS12690 [old locus tag: NWMN_2199 ]
  • symbol: NWMN_RS12690
  • product: CHAP domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2419713..2420516
  • length: 804
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2419713..2420516) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2199

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAGAAAATCGCTACAGCTACTATCGCAACTGCAGGATTCGCTACAATCGCAATTGCA
    TCAGGAAATCAAGCTCATGCTTCTGAGCAAGATAACTACGGTTATAATCCAAACGACCCA
    ACATCATATAGCTATACTTACACTATTGATGCACAAGGTAACTACCATTACACATGGAAA
    GGTAACTGGCATCCAAGTCAATTAAACCAAGATAATGGCTACTACAGCTATTACTACTAC
    AATGGTTACAATAACTATAACAATTACAACAACGGTTATAGCTACAATAACTACAGCCGT
    TACAACAACTACTCAAATAATAATCAATCATATAACTACAATAACTATAATAGTTACAAC
    ACAAACAGCTACCGTACTGGTGGTTTAGGTGCAAGCTACAGCACTTCAAGCAACAATGTT
    CAAGTAACTACAACTATGGCTCCATCATCAAATGGCCGTTCAATCTCAAGTGGTTATACT
    TCAGGACGTAACTTATACACTTCTGGTCAATGTACATACTACGTATTTGATCGTGTAGGT
    GGTAAAATCGGTTCAACTTGGGGCAATGCAAGTAACTGGGCTAACGCAGCTGCAAGAGCT
    GGTTACACAGTGAACAATACACCAAAAGCTGGTGCAATTATGCAAACAACTCAAGGTGCA
    TACGGTCACGTTGCATACGTTGAAAGTGTTAACAGCAATGGTTCAGTAAGAGTTTCAGAA
    ATGAACTATGGTTATGGCCCAGGTGTTGTAACTTCACGTACAATCTCAGCTAGCCAAGCT
    GCTGGTTATAACTTCATTCACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    804

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS12690 [old locus tag: NWMN_2199 ]
  • symbol: NWMN_RS12690
  • description: CHAP domain-containing protein
  • length: 267
  • theoretical pI: 9.09862
  • theoretical MW: 29327
  • GRAVY: -0.846816

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_2199
  • PFAM:
    Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 76.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.02
    • Extracellular Score: 9.98
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0.0045
    • Extracellular Score: 0.9955
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 27 aa
    • SP(Sec/SPI): 0.998381
    • TAT(Tat/SPI): 0.000739
    • LIPO(Sec/SPII): 0.000657
    • Cleavage Site: CS pos: 27-28. AHA-SE. Pr: 0.9903
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKIATATIATAGFATIAIASGNQAHASEQDNYGYNPNDPTSYSYTYTIDAQGNYHYTWKGNWHPSQLNQDNGYYSYYYYNGYNNYNNYNNGYSYNNYSRYNNYSNNNQSYNYNNYNSYNTNSYRTGGLGASYSTSSNNVQVTTTMAPSSNGRSISSGYTSGRNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAARAGYTVNNTPKAGAIMQTTQGAYGHVAYVESVNSNGSVRVSEMNYGYGPGVVTSRTISASQAAGYNFIH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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