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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS11605 [old locus tag: NWMN_2006 ]
- pan locus tag?: SAUPAN005393000
- symbol: NWMN_RS11605
- pan gene symbol?: atpC
- synonym:
- product: ATP synthase epsilon chain
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS11605 [old locus tag: NWMN_2006 ]
- symbol: NWMN_RS11605
- product: ATP synthase epsilon chain
- replicon: chromosome
- strand: -
- coordinates: 2225098..2225502
- length: 405
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
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241
301
361ATGAATACATTAAACCTAGATATTGTCACTCCTAATGGTTCTGTTTACAATCGTGATAAT
GTTGAACTCGTTGTTATGCAAACAACAGCTGGTGAGATAGGTGTCATGAGTGGACATATT
CCAACTGTAGCTGCTTTAAAAACAGGCTTTGTAAAAGTGAAATTTCACGATGGAACTGAA
TATATTGCTGTAAGCGATGGCTTTGTTGAAGTTAGAAAAGATAAAGTTTCAATCATTGTT
CAGACTGCAGAAACTGCAAGAGAAATTGATGTTGAAAGAGCTAAATTAGCCAAAGCAAGA
GCAGAGTCTCACTTGGAAAATGATGACGACAATACTGATATTCATAGAGCCGAAAGAGCT
TTAGAGAGAGCAAATAACCGTTTGCGTGTGGCTGAATTAAAATAG60
120
180
240
300
360
405
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS11605 [old locus tag: NWMN_2006 ]
- symbol: NWMN_RS11605
- description: ATP synthase epsilon chain
- length: 134
- theoretical pI: 5.65749
- theoretical MW: 14843.6
- GRAVY: -0.353731
⊟Function[edit | edit source]
- TIGRFAM: Energy metabolism ATP-proton motive force interconversion ATP synthase F1, epsilon subunit (TIGR01216; EC 3.6.3.14; HMM-score: 120.2)and 2 morealternate F1F0 ATPase, F1 subunit epsilon (TIGR03166; EC 3.6.3.-; HMM-score: 46.4)PRTRC system protein A (TIGR03735; HMM-score: 13.6)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: no clan defined ATP-synt_DE_N; ATP synthase, Delta/Epsilon chain, beta-sandwich domain (PF02823; HMM-score: 88.6)and 2 moreATP-synt_DE; ATP synthase, Delta/Epsilon chain, long alpha-helix domain (PF00401; HMM-score: 51.6)DUF2016; Domain of unknown function (DUF2016) (PF09436; HMM-score: 15)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.010566
- TAT(Tat/SPI): 0.003491
- LIPO(Sec/SPII): 0.000862
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNTLNLDIVTPNGSVYNRDNVELVVMQTTAGEIGVMSGHIPTVAALKTGFVKVKFHDGTEYIAVSDGFVEVRKDKVSIIVQTAETAREIDVERAKLAKARAESHLENDDDNTDIHRAERALERANNRLRVAELK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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