PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005393000
• symbol^?: atpC
• synonym:
• description^?: F0F1 ATP synthase subunit epsilon

  descriptions from strain specific annotations:

  • F0F1 ATP synthase subunit epsilon
  • ATP synthase epsilon chain
  • ATP synthase F0F1 subunit epsilon
  • FOF1-ATP synthase, subunit epsilon
  • ATP synthase epsilon chain, AtpE
  • ATP synthase F1, epsilon subunit
  • ATP synthase F1 sector epsilon subunit
  • ATP synthase F1 subunit epsilon
• strand^?: -
• coordinates^?: 5555620..5556024
• synteny block^?: BlockID0041890
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2094 (atpC)
N315:
SA1904 (atpC)
NCTC8325:
SAOUHSC_02340 (atpC)
Newman:
NWMN_2006 (atpC)
USA300_FPR3757:
SAUSA300_2057 (atpC)
04-02981:
SA2981_2042 (atpC)
08BA02176:
C248_2116 (atpC)
11819-97:
MS7_2118 (atpC)
6850:
RSAU_001940 (atpC)
71193:
ST398NM01_2144
ECT-R 2:
ECTR2_1958 (atpC)
ED133:
SAOV_2143c
ED98:
SAAV_2157 (atpC)
HO 5096 0412:
SAEMRSA15_20100 (atpC)
JH1:
SaurJH1_2176 (atpC)
JH9:
SaurJH9_2138 (atpC)
JKD6008:
SAA6008_02140 (atpE)
JKD6159:
SAA6159_02016 (atpE)
LGA251:
SARLGA251_19030 (atpC)
M013:
M013TW_2061
MRSA252:
SAR2190 (atpC)
MSHR1132:
SAMSHR1132_19250
MSSA476:
SAS2005 (atpC)
Mu3:
SAHV_2086 (atpC)
Mu50:
SAV2102 (atpC)
MW2:
MW2026 (atpC)
RF122:
SAB1986c (atpC)
ST398:
SAPIG2144 (atpC)
T0131:
SAT0131_02263
TCH60:
HMPREF0772_11089 (atpC)
TW20:
SATW20_22400 (atpC)
USA300_TCH1516:
USA300HOU_2092 (atpC)
VC40:
SAVC_09385 (atpC)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNTLNLDIVTPNGSVYNRDNVELVVMQTTAGEIGVMSGHIPTVAALKTGFVKVKFHDGTE
  N315            MNTLNLDIVTPNGSVYNRDNVELVVMQTTAGEIGVMSGHIPTVAALKTGFVKVKFHDGTE
  NCTC8325        MNTLNLDIVTPNGSVYNRDNVELVVMQTTAGEIGVMSGHIPTVAALKTGFVKVKFHDGTE
  Newman          MNTLNLDIVTPNGSVYNRDNVELVVMQTTAGEIGVMSGHIPTVAALKTGFVKVKFHDGTE
  USA300_FPR3757  MNTLNLDIVTPNGSVYNRDNVELVVMQTTAGEIGVMSGHIPTVAALKTGFVKVKFHDGTE
                  ************************************************************
  
  COL             YIAVSDGFVEVRKDKVSIIVQTAETAREIDVERAKLAKARAESHLENDDDNTDIHRAERA
  N315            YIAVSDGFVEVRKDKVSIIVQTAETAREIDVERAKLAKARAESHLENDDDNTDIHRAERA
  NCTC8325        YIAVSDGFVEVRKDKVSIIVQTAETAREIDVERAKLAKARAESHLENDDDNTDIHRAERA
  Newman          YIAVSDGFVEVRKDKVSIIVQTAETAREIDVERAKLAKARAESHLENDDDNTDIHRAERA
  USA300_FPR3757  YIAVSDGFVEVRKDKVSIIVQTAETAREIDVERAKLAKARAESHLENDDDNTDIHRAERA
                  ************************************************************
  
  COL             LERANNRLRVAELK
  N315            LERANNRLRVAELK
  NCTC8325        LERANNRLRVAELK
  Newman          LERANNRLRVAELK
  USA300_FPR3757  LERANNRLRVAELK
                  **************