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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS05590 [old locus tag: NWMN_0995 ]
- pan locus tag?: SAUPAN001425000
- symbol: NWMN_RS05590
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS05590 [old locus tag: NWMN_0995 ]
- symbol: NWMN_RS05590
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1102614..1103402
- length: 789
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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721
781ATGCAAGCATTACAAACATTTAATTTTAAAGAGCTACCAGTAAGAACAGTGGAAATTGAA
AACGAACCTTATTTTGTAGGAAAAGATATTGCTGAAATTTTAGGATATGCAAGGGCAGAC
AATGCCATCAGAAATCATGTTGATAGCGAGGACAAGCTGACGCACCAATTTAGTGCATCA
GGTCAAAACAGAAATATGATCATTATCAATGAATCAGGATTATACAGTTTAATCTTTGAC
GCTTCTAAACAAAGTAAAAACGAAAAAATCAGAGAAACCGCTCGAAAATTCAAACGATGG
GTAACATCAGACGTCCTACCAGCCATTCGCAAACACGGTATCTACGCAACAGACAATGTA
ATTGAACAAACATTAAAAGATCCAGACTACATTATTACAGTGTTGACTGAGTATAAGAAA
GAAAAAGAGCAAAACTTACTTTTACAACAAGAAATCGGAGAACTAAAACCCAAAGCAGAC
TATGTAGATGAAATCTTAAAGTCAACTGGCACATTAGCCACAACTCAAATCGCGGCAGAC
TACGGTATATCAGCACAAAAGTTAAACAAACTACTACACGAAGCTAGACTACAACGAAAA
GTAAATAAACAGTGGGTGCTTTACTCAGAACACATGGGCAAGAGTTACACAGAATCAGAC
ACTATACCAATTGTACGCTCTGACGGTAGAGAAGACACAGTTTTACAAACTAGATGGACA
CAAAAAGGTAGATTGAAAATACATGAAATCATGACTGAATTCGGTTATGAAGCTAACGTA
ACTGCTTAA60
120
180
240
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420
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540
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660
720
780
789
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS05590 [old locus tag: NWMN_0995 ]
- symbol: NWMN_RS05590
- description: hypothetical protein
- length: 262
- theoretical pI: 7.18406
- theoretical MW: 30139.9
- GRAVY: -0.604962
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, NCTC8325
- PFAM: no clan defined ANT; Phage antirepressor protein KilAC domain (PF03374; HMM-score: 101.8)Bro-N; BRO family, N-terminal domain (PF02498; HMM-score: 96.3)and 2 moreP22_AR_N; P22_AR N-terminal domain (PF10547; HMM-score: 19.1)HTH (CL0123) HTH_DeoR; DeoR-like helix-turn-helix domain (PF08220; HMM-score: 12.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006449
- TAT(Tat/SPI): 0.000291
- LIPO(Sec/SPII): 0.000415
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MQALQTFNFKELPVRTVEIENEPYFVGKDIAEILGYARADNAIRNHVDSEDKLTHQFSASGQNRNMIIINESGLYSLIFDASKQSKNEKIRETARKFKRWVTSDVLPAIRKHGIYATDNVIEQTLKDPDYIITVLTEYKKEKEQNLLLQQEIGELKPKADYVDEILKSTGTLATTQIAADYGISAQKLNKLLHEARLQRKVNKQWVLYSEHMGKSYTESDTIPIVRSDGREDTVLQTRWTQKGRLKIHEIMTEFGYEANVTA
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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