PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001425000
• symbol^?: —
• synonym:
• description^?: bacteriophage L54a antirepressor

  descriptions from strain specific annotations:

  • bacteriophage L54a antirepressor
  • phage anti-repressor protein
  • prophage L54a, antirepressor
  • bacteriophage L54a, antirepressor
  • phage protein
  • prophage antirepressor
• strand^?: +
• coordinates^?: 1704233..1705024
• synteny block^?: BlockID0009030
• occurrence^?: in 15% of 33 strains

⊟Orthologs

COL:
SACOL0325
N315:
—
NCTC8325:
SAOUHSC_02080
Newman:
NWMN_0995
USA300_FPR3757:
—
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_01890
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_03320
USA300_TCH1516:
—
VC40:
—

⊟Genome Viewer

COL
NCTC8325
Newman

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MQALQTFNFKELPVRTVEIENEPYFVGKDIAEILGYARSDNAIRNHVDSEDKLTHQFSAS
  NCTC8325        MQALQTFNFKELPVRTVEIENEPYFVGKDIAEILGYARSDNAIRNHVDSEDKLTHQFSAS
  Newman          MQALQTFNFKELPVRTVEIENEPYFVGKDIAEILGYARADNAIRNHVDSEDKLTHQFSAS
                  **************************************:*********************
  
  COL             GQNRNMIIINESGLYSLIFDASKQSKNEKIRETARKFKRWVTSDVLPAIRKHGIYATDNV
  NCTC8325        GQNRNMIIINESGLYSLIFDASKQSKNEKIRETARKFKRWVTSDVLPAIRKHGIYATDNV
  Newman          GQNRNMIIINESGLYSLIFDASKQSKNEKIRETARKFKRWVTSDVLPAIRKHGIYATDNV
                  ************************************************************
  
  COL             IEQTLKDPDYIITVLTEYKKEKEQNLLLQQEIGELKPKADYVDEILKSTGTLATTQIAAD
  NCTC8325        IEQTLKDPDYIITVLTEYKKEKEQNLLLQQEIGELKPKADYVDEILKSTGTLATTQIAAD
  Newman          IEQTLKDPDYIITVLTEYKKEKEQNLLLQQEIGELKPKADYVDEILKSTGTLATTQIAAD
                  ************************************************************
  
  COL             YGISAQKLNKLLHEARLQRKVNKQWVLYSEHMGKSYTESDTIAIVRSDGREDTVLQTRWT
  NCTC8325        YGISAQKLNKLLHEARLQRKVNKQWVLYSEHMGKSYTDSDTITIVRSDGREDTVLQTRWT
  Newman          YGISAQKLNKLLHEARLQRKVNKQWVLYSEHMGKSYTESDTIPIVRSDGREDTVLQTRWT
                  *************************************:****.*****************
  
  COL             QKGRLKIHEIMTEFGYEANLGGA
  NCTC8325        QKGRLKIHEIMTEFGYEANLGGA
  Newman          QKGRLKIHEIMTEFGYEANV-TA
                  *******************:  *