From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS01365 [old locus tag: NWMN_0247 ]
  • pan locus tag?: SAUPAN001223000
  • symbol: NWMN_RS01365
  • pan gene symbol?: —
  • synonym:
  • product: formate/nitrite transporter

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS01365 [old locus tag: NWMN_0247 ]
  • symbol: NWMN_RS01365
  • product: formate/nitrite transporter
  • replicon: chromosome
  • strand: -
  • coordinates: 300845..301669
  • length: 825
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (300845..301669) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0247

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    GTGAAGGAGAAACATATTAAATGGGATAAGATTTTTTATGGGGACGACTGGGTAAATAAC
    GTAGTCGAAACGATAAGAACAAAAGATATATTACAAAGCGTTTATTTAAAACGTTATTTA
    TTACGCGCGATGATGGCAGGATTTATTATCGGGATTATTACGGTCTTCGTATTATCAGTT
    AAAGCAACACACGAACCAGATTTACCGCCAGGCATTGTGAATATGGCCAGTGCCATTACA
    TTCAGCTTTGCGTTAGTACTCATTTTATTTACAAACTCCGAACTACTAACCAGTAACTTC
    ATGTACTTTACTGTAGGCCTGTATTATAAAGTAATTAAACCAACTAGAGTATTGAAAATA
    TTTTTATTATGCTTTGCAGGAAATATTTTAGGTGCTGCTATTTTATTTAGTTTCATGCGT
    TTTTCAAATGTAATGACGCCAGATATGTTAAATCAGTTATCAGCAGTTATAGAGCATAAA
    ACGTTGTCTACTGGTTTTGTAAGTATATTAATGAAAGCGATCTTCGCCAATTTCTTTATC
    AATATTTCATTAGTTATTGCCATGCAAATTGACGATGTACTCGCAAAAATGTTTGTCATG
    ATGTTCGGTGTTACCATATTCGCCTTTATGGGTTATGAACACGTCGTTTACAACAGTTGC
    TTATTTATGGGTGGTTTAATTTATCAAGTTGATACATTGCACTTCATACCAGCTATTTCG
    AATATCGCTGCGGCTTTTATCGGTAACTATATTGGAGGCGGACTCATTATAGGTTTATTC
    TATGCTTACTTGAATGATCATCATCAATTTTATAAAAATAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    825

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS01365 [old locus tag: NWMN_0247 ]
  • symbol: NWMN_RS01365
  • description: formate/nitrite transporter
  • length: 274
  • theoretical pI: 8.89564
  • theoretical MW: 31018.8
  • GRAVY: 0.727372

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Anions formate/nitrite transporter (TIGR00790; HMM-score: 128.9)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids formate transporter FocA (TIGR04060; HMM-score: 107.2)
  • TheSEED: see NWMN_0247
  • PFAM:
    Aquaporin-like (CL0716) Form_Nir_trans; Formate/nitrite transporter (PF01226; HMM-score: 166.7)
    and 2 more
    no clan defined DUF2613; Protein of unknown function (DUF2613) (PF11021; HMM-score: 14.4)
    DUF6644; Family of unknown function (DUF6644) (PF20349; HMM-score: 14.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9997
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0003
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008526
    • TAT(Tat/SPI): 0.001089
    • LIPO(Sec/SPII): 0.000754
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKEKHIKWDKIFYGDDWVNNVVETIRTKDILQSVYLKRYLLRAMMAGFIIGIITVFVLSVKATHEPDLPPGIVNMASAITFSFALVLILFTNSELLTSNFMYFTVGLYYKVIKPTRVLKIFLLCFAGNILGAAILFSFMRFSNVMTPDMLNQLSAVIEHKTLSTGFVSILMKAIFANFFINISLVIAMQIDDVLAKMFVMMFGVTIFAFMGYEHVVYNSCLFMGGLIYQVDTLHFIPAISNIAAAFIGNYIGGGLIIGLFYAYLNDHHQFYKNN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS01365&oldid=68906"