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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1723 [new locus tag: NWMN_RS09715 ]
- pan locus tag?: SAUPAN004756000
- symbol: hemY
- pan gene symbol?: hemY
- synonym:
- product: protoporphyrinogen oxidase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1723 [new locus tag: NWMN_RS09715 ]
- symbol: hemY
- product: protoporphyrinogen oxidase
- replicon: chromosome
- strand: -
- coordinates: 1923252..1924652
- length: 1401
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331016 NCBI
- RefSeq: YP_001332757 NCBI
- BioCyc:
- MicrobesOnline: 3707283 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1381GTGACTAAATCAGTGGCTATTATAGGAGCGGGGATAACAGGTTTATCAAGTGCATATTTT
TTAAAACAGCAAGATCCTAATATTGATGTAACCATCTTTGAAGCATCGAATCGTCCGGGG
GGAAAGATTCAATCGTATCGTAAAGATGGTTATATGATTGAACTAGGGCCTGAATCTTAT
TTAGGTAGAAAAACGATTATGACAGAATTAGCGAAAGATATTGGATTAGAACAAGATATT
GTTACAAATACGACTGGACAATCATATATTTTTGCGAAAAATAAATTATATCCGATTCCA
GGTGGTTCAATTATGGGTATTCCAACAGATATTAAACCATTTGTTACTACAAAATTAATA
TCGCCACTTGGTAAATTAAGAGCAGGGTTTGATTTATTAAAAAAACCTACTCAAATGCAG
GATGGTGACATTTCTGTTGGTGCATTTTTCAGAGCAAGATTAGGTAATGAGGTACTTGAG
AATTTAATAGAGCCTTTAATGGGTGGTATTTATGGTACCGATATTGATAAATTAAGTTTG
ATGAGTACGTTTCCTAATTTTAAAGAAAAAGAAGAGGCATTCGGAAGTCTGATAAAAGGT
ATGAAGGATGAGAAAAATAAGCGTCTGAAACAAAGACAATTATATCCTGGCGCACCGAAA
GGACAATTCAAACAATTTAAGCATGGTTTAAGCTCATTTATTGAAGCATTAGAACAAGAT
GTTAAAAATAAAGGTGTGACAATACGCTACAATACGTCAGTGGATGATATAATTACATCT
CAAAAACAATATAAAATTGTTTACAATGATCAACTAGAAGAAGTGTATGATGGCGTATTA
GTAACGACACCACATCAAGTGTTTTTAAATTGGTTCGGACAAGATCCAGCATTTGATTAC
TTTAAAACGATGGATAGTACGACTGTTGCAACTGTTGTATTGGCATTTGATGAAAAAGAC
ATTGAAAATACCCATGATGGTACTGGCTTCGTAATTGCGAGAACGAGTGATACAGACATT
ACCGCATGTACTTGGACATCGAAAAAATGGCCATTTACTACACCGGAAGGTAAGGTTTTG
ATTCGTGCGTATGTAGGTAAACCAGGTGATACTGTGGTTGATGATCATACAGATAATGAA
TTAGTATCGATTGTACGTAGAGATTTAAGTCAAATGATGACATTTAAAGGTGATCCTGAA
TTTACAATTGTCAATCGTTTGCCGAAAAGTATGCCACAGTACCATGTCGGTCATATTCAA
CAAATTAGACAGATTCAAGCACATATTAAACAAACATATCCACGACTTAGAGTAACTGGT
GCATCTTTTGAAGCGTTGGGACTACCTGATTGTATTACGCAAAGTAAAGTTGCTGCTGAA
GAAGTAATCGCAGAGTTGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1723 [new locus tag: NWMN_RS09715 ]
- symbol: HemY
- description: protoporphyrinogen oxidase
- length: 466
- theoretical pI: 6.89499
- theoretical MW: 52027.2
- GRAVY: -0.318026
⊟Function[edit | edit source]
- ⊞reaction: EC 1.3.3.4? ExPASy
- ⊞TIGRFAM: Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin protoporphyrinogen oxidase (TIGR00562; EC 1.3.3.4; HMM-score: 381.8)and 23 more
- TheSEED :
- Protoporphyrinogen IX oxidase, aerobic, HemY (EC 1.3.3.4)
- ⊞PFAM: NADP_Rossmann (CL0063) Amino_oxidase; Flavin containing amine oxidoreductase (PF01593; HMM-score: 194.1)and 16 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors: FAD
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTKSVAIIGAGITGLSSAYFLKQQDPNIDVTIFEASNRPGGKIQSYRKDGYMIELGPESYLGRKTIMTELAKDIGLEQDIVTNTTGQSYIFAKNKLYPIPGGSIMGIPTDIKPFVTTKLISPLGKLRAGFDLLKKPTQMQDGDISVGAFFRARLGNEVLENLIEPLMGGIYGTDIDKLSLMSTFPNFKEKEEAFGSLIKGMKDEKNKRLKQRQLYPGAPKGQFKQFKHGLSSFIEALEQDVKNKGVTIRYNTSVDDIITSQKQYKIVYNDQLEEVYDGVLVTTPHQVFLNWFGQDPAFDYFKTMDSTTVATVVLAFDEKDIENTHDGTGFVIARTSDTDITACTWTSKKWPFTTPEGKVLIRAYVGKPGDTVVDDHTDNELVSIVRRDLSQMMTFKGDPEFTIVNRLPKSMPQYHVGHIQQIRQIQAHIKQTYPRLRVTGASFEALGLPDCITQSKVAAEEVIAEL
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: hemY < hemH < hemE
⊟Regulation[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available