Jump to navigation
Jump to search
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_0696 [new locus tag: NWMN_RS03940 ]
- pan locus tag?: SAUPAN002623000
- symbol: NWMN_0696
- pan gene symbol?: dtpT
- synonym:
- product: di-/tripeptide ABC transporter
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_0696 [new locus tag: NWMN_RS03940 ]
- symbol: NWMN_0696
- product: di-/tripeptide ABC transporter
- replicon: chromosome
- strand: -
- coordinates: 780230..781735
- length: 1506
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330400 NCBI
- RefSeq: YP_001331730 NCBI
- BioCyc:
- MicrobesOnline: 3706243 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501ATGACACAACAAAACTCCCATGGAAATCAAATTCAAGACATACCTCAAACAGGATTTTTC
GGGCATCCTCGAGGACTAGGCGTACTCTTCTTTGTAGAGTTCTGGGAAAGGTTTAGTTAT
TATGGCATGCGTGCCCTACTCATTTTCTACATGTACTTTGCCGTAACAGATAATGGCCTT
GGAATTGATAAAACAACAGCTATGTCAATTATGTCAGTTTATGGTTCATTAATCTATATG
ACATCAATACCAGGCGGATGGATTGCTGACAGAATTACAGGCACTAGAGGCGCTACTTTA
TTAGGTGCAGTCTTTATTATTATCGGACATATTTGTTTAAGCTTACCATTTGCATTAATC
GGCTTATTCACATCAATGTTCTTCATCATTATTGGTTCAGGTTTAATGAAGCCAAACATT
TCAAATATCGTTGGCCGTTTATATCCTGAAAATGATAGACGTATGGATGCAGGTTTTGTT
ATTTTCTATATGTCAGTTAATATGGGTGCATTATTATCACCTATTATTTTGCAACACTTT
GTTAATGTTAAAAACTTCCACGGCGGATTCTTGATTGCAGCAGTTGGTATGGCATTAGGT
TTAGTATGGTATGTACTTTTCAACCGCAAAAACTTAGGTAGCGTTGGTATGAAACCTACT
AACCCATTGACACCAGCTGAAAAGAAAAAGTATGGTCTTATTATCGGAAGTGTTGTTTTA
GCAATTGTATTAATTATCGTTATTGGTGCATTAACTAACTCATTATCATTTAACTTAGTT
AGTAATACTGTTTTAGTATTAGGTATTGCATTACCAATCATTTACTTCACTTTAATTATT
AGAAGTAAAGATGTCACTGATACTGAACGTTCTCGTGTTAAAGCATTTATTCCATTATTT
ATTCTTGGAATGGTGTTCTGGGCTATTCAAGAACAAGGGTCTAATGTATTAAACATATAT
GGAATTGAACATTCAGATATGAAATTAAACTTATTTGGTTGGAAAACAAACTTTGGTGAA
GCGATCTTCCAATCAATTAACCCATTATTTATTTTATTACTAGCTCCAATTATTTCACTT
TTATGGCAAAAGCTTGGAACTAAACAACCTAGCCTGCCAGTAAAATTTGCAATTGGTACG
TTCTTAGCAGGTGCGTCATACATACTAATTGGTATTGTAGGTTATGCATCAGGTTCATCA
AACTTTTCAGTTAACTGGGTTATTTTATCGTACATTATTTGTGTTATCGGTGAGCTATGC
TTATCACCAACGGGTAATAGTGCTGCTGTTAAGTTAGCACCTAAAGCATTTAATGCCCAA
ATGATGAGTATTTGGTACTTAACTAACGCTTCTGCACAAGCAATCAATGGTACTTTAGTT
AAGTTAATAGAACCACTAGGTCAAACAAATTACTTTATTTTCCTAGGTGTTGTTGCAATT
ATTGTTACAACAATTGTATTAGCATTCTCACCTTTAATCATCAAAGCGATGAAAGGTATA
CGTTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1440
1500
1506
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_0696 [new locus tag: NWMN_RS03940 ]
- symbol: NWMN_0696
- description: di-/tripeptide ABC transporter
- length: 501
- theoretical pI: 9.98893
- theoretical MW: 54827.9
- GRAVY: 0.727944
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines amino acid/peptide transporter (Peptide:H+ symporter) (TIGR00924; HMM-score: 364.6)and 1 moreTransport and binding proteins Amino acids, peptides and amines oligopeptide transporter, peptide:H+ symporter (TIGR00926; HMM-score: 71.2)
- TheSEED :
- Di-tripeptide/cation symporter DtpT
- PFAM: MFS (CL0015) PTR2; POT family (PF00854; HMM-score: 210)and 2 moreMFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 69.4)no clan defined GP41; Retroviral envelope protein (PF00517; HMM-score: 7.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 14
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9997
- Cell wall & surface Score: 0
- Extracellular Score: 0.0003
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001554
- TAT(Tat/SPI): 0.000134
- LIPO(Sec/SPII): 0.000376
- predicted transmembrane helices (TMHMM): 13
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator: CodY (repression) regulon
CodY (TF) important in Amino acid metabolism; RegPrecise
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]