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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_002637
- pan locus tag?: SAUPAN006380000
- symbol: gtfB
- pan gene symbol?: gtfB
- synonym:
- product: accessory Sec system glycosylation chaperone GtfB
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_002637
- symbol: gtfB
- product: accessory Sec system glycosylation chaperone GtfB
- replicon: chromosome
- strand: -
- coordinates: 2648992..2650350
- length: 1359
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1321ATGATTAAATTATTTGATTACTTTAACGATCATTCACGAAAGTTATATGAGTCTTTTAAA
GCCAGTAAGTTGGAAGAAGATTTAACAATTGTACTCAATGACAATGGCTTTTTACCGGAC
GATGTTATATCACCGTATCAATTTTTTGCAGATAATCATAATACAGAAAATATGAAACCA
CGATTTTTTAATCAGGTTACTGTACCAGCTTTTTGGGAAATTAAAGGTAACAACAATTCG
GCTACAATTAATGATATGGGACGTCTACGAGGCAAAATATTTTATCAAAGTGGAGAGCGC
CCTAGAATTGTTAGTCGTGTCGAATGGTTTGATGACCAACAACGTGTCCGATTTGTCGAT
TATTATTCTAAGAATGGTATTAAATTTGCACAAACTGTTTACGATTTAAATCGTAAAGCG
ATCTTGAAGAAATATATGACAGCAGAAGGTAAAGAAGTGATTTATGAAAATTTTGTAACA
TCTGATGTCATATTGGATTGGCAAGGGAAGTCTTACTTTTTCCCTTCAAAGCTCGCATTC
GTATTATTTTTTATCAAGCAACTTGAAATTACGGAACATCATTTCGTTATTAACTCACTA
GCCCTACCATTTTCAGTGTTATATAATTTGCCATCAAAAGGTAGTGATGTTTTGGTATGG
CAAGAACACTGTAATGGTAATGTCCCGGGAAATATGCAATTGATGTGTAAAGGTGATATG
AAACGACATTGTAATATTATTATTCCAGATAAAAACGAATATGAAACAATGCTCAATATA
GCAGACGCAAAGGTTCAATCTCGTATTTTACAAGGCGGATATCTATATAACTATCGTAGT
CGTAATAGATATACTAAAGAAATTGTAATATTAACTAACTCGGATCAACTTCGTAACATC
AAGGTATTGGTTGAAACTTTACCAGATTTTAAGTTTCACATCGCTGCTATTACAGAGATG
TCTGATAAGCTAATGCAACTTGATCAATATGCTAATGTGCATTTATACCCATCTATTAAT
ATAGACAGGGTAAATGAACTATACCAGTTATGTGATATTTATCTTGATATCAATGAGGGT
AATGAAATTTTAAATGCGGTGGAACAAGCGTTTGACTATGAGTTGTTGATTTTAGGTTAT
CGTCAAACCGCACACCATGCTAAAGTAACATTATCAGAGCACTTATTTGAGCATAATGAT
GAGATAACAATGGAAAGTAAAGACCAATTAATACAAATGTTAGAGAGTTTGAAAGATCAA
CAACAGTTTCGAGATGCTTTATTAGCACAAAAAGCACATGCACACGAAATCTCGCGTGAA
CAATTCGAGCAAGTTTTTAAACAGGCGCTCGAAAGCTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_002637
- symbol: GtfB
- description: accessory Sec system glycosylation chaperone GtfB
- length: 452
- theoretical pI: 5.89667
- theoretical MW: 53056
- GRAVY: -0.411726
⊟Function[edit | edit source]
- TIGRFAM: Protein fate Protein modification and repair accessory Sec system glycosyltransferase GtfB (TIGR02919; EC 2.4.1.-; HMM-score: 666.6)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: GT-B (CL0113) Glyco_trans_1_2; Glycosyl transferase-like (PF13524; HMM-score: 16.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9428
- Cytoplasmic Membrane Score: 0.0125
- Cell wall & surface Score: 0.0023
- Extracellular Score: 0.0424
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001797
- TAT(Tat/SPI): 0.000134
- LIPO(Sec/SPII): 0.000283
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MIKLFDYFNDHSRKLYESFKASKLEEDLTIVLNDNGFLPDDVISPYQFFADNHNTENMKPRFFNQVTVPAFWEIKGNNNSATINDMGRLRGKIFYQSGERPRIVSRVEWFDDQQRVRFVDYYSKNGIKFAQTVYDLNRKAILKKYMTAEGKEVIYENFVTSDVILDWQGKSYFFPSKLAFVLFFIKQLEITEHHFVINSLALPFSVLYNLPSKGSDVLVWQEHCNGNVPGNMQLMCKGDMKRHCNIIIPDKNEYETMLNIADAKVQSRILQGGYLYNYRSRNRYTKEIVILTNSDQLRNIKVLVETLPDFKFHIAAITEMSDKLMQLDQYANVHLYPSINIDRVNELYQLCDIYLDINEGNEILNAVEQAFDYELLILGYRQTAHHAKVTLSEHLFEHNDEITMESKDQLIQMLESLKDQQQFRDALLAQKAHAHEISREQFEQVFKQALES
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: SigB (activation) regulon
SigB (sigma factor) controlling a large regulon involved in stress/starvation response and adaptation; transcription unit predicted or transferred from N315 and NCTC 8325 in Wolfgramm et al. (https://doi.org/10.1101/2025.09.03.674026) other strains
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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