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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001904
  • pan locus tag?: SAUPAN004860000
  • symbol: JSNZ_001904
  • pan gene symbol?: —
  • synonym:
  • product: type 1 glutamine amidotransferase domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001904
  • symbol: JSNZ_001904
  • product: type 1 glutamine amidotransferase domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1921520..1922035
  • length: 516
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACTAAAAAAGTAGCAATTATTCTAGCAAACGAATTTGAAGATATAGAATATTCAAGC
    CCTAAAGAGGCATTAGAGAATGCAGGCTTTAATACTGTAGTGATTGGAGATACTGCAAAT
    AGTGAAGTTGTTGGTAAACACGGTGAAAAAGTTACTGTCGATGTAGGCATTACAGAAGCT
    AAACCAGAAGATTATGATGCATTATTAATTCCTGGAGGATTTTCACCAGATCATTTACGT
    GGAGATACAGAAGGTCGATATGGCACATTTGCTAAATACTTTACTAAAAATGATGTACCA
    ACATTTGCCATTTGTCATGGGCCACAAATACTAATAGATACAGATGATTTAAAAGGTCGT
    ACGTTAACAGCAGTATTGAACGTGCGCAAAGATTTATCAAATGCAGGTGCACATGTAGTT
    GATGAGTCAGTAGTTGTAGATAACAATATTGTAACAAGTCGAGTACCAGACGATTTAGAT
    GATTTTAATCGAGAAATCGTTAAACAATTACAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    516

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001904
  • symbol: JSNZ_001904
  • description: type 1 glutamine amidotransferase domain-containing protein
  • length: 171
  • theoretical pI: 4.36059
  • theoretical MW: 18661.7
  • GRAVY: -0.28655

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides intracellular protease, PfpI family (TIGR01382; HMM-score: 157)
    and 4 more
    Unknown function General DJ-1 family protein (TIGR01383; HMM-score: 62.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylformylglycinamidine synthase I (TIGR01737; EC 6.3.5.3; HMM-score: 25.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Pyrimidine ribonucleotide biosynthesis CTP synthase (TIGR00337; EC 6.3.4.2; HMM-score: 20.9)
    Metabolism Amino acid biosynthesis Histidine family imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (TIGR01855; EC 2.4.2.-; HMM-score: 14.2)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Glutaminase_I (CL0014) DJ-1_PfpI; DJ-1/PfpI family (PF01965; HMM-score: 184.1)
    and 5 more
    GATase; Glutamine amidotransferase class-I (PF00117; HMM-score: 22.9)
    GATase_5; CobB/CobQ-like glutamine amidotransferase domain (PF13507; HMM-score: 15.9)
    GATase_3; CobB/CobQ-like glutamine amidotransferase domain (PF07685; HMM-score: 15.5)
    Catalase_C; C-terminal domain found in long catalases (PF18011; HMM-score: 12.8)
    NTP_transf (CL0260) DUF2204; Nucleotidyl transferase of unknown function (DUF2204) (PF09970; HMM-score: 12.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9646
    • Cytoplasmic Membrane Score: 0.0004
    • Cell wall & surface Score: 0.0012
    • Extracellular Score: 0.0339
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011702
    • TAT(Tat/SPI): 0.000425
    • LIPO(Sec/SPII): 0.001101
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTKKVAIILANEFEDIEYSSPKEALENAGFNTVVIGDTANSEVVGKHGEKVTVDVGITEAKPEDYDALLIPGGFSPDHLRGDTEGRYGTFAKYFTKNDVPTFAICHGPQILIDTDDLKGRTLTAVLNVRKDLSNAGAHVVDESVVVDNNIVTSRVPDDLDDFNREIVKQLQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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