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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001475
  • pan locus tag?: SAUPAN003960000
  • symbol: JSNZ_001475
  • pan gene symbol?: —
  • synonym:
  • product: DUF1672 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001475
  • symbol: JSNZ_001475
  • product: DUF1672 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1518415..1519365
  • length: 951
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGTTTAAAAAGGCGAAATTAATCTTAATAGCAACGCTACTGTTATCAGGATGTTCAGCG
    ATGAATAATGAATCAAAAAAAGACACAAATACAGACACAAATACAGAAACAAATACAGAA
    ATAAAATCAGTACCAGAAGAAATGGAAGCTTCAAAATATGTAGGCCAAGGCTTCCAACCG
    CCTGCAGAAAAAGATGCGATTGAATTTGCGAAGAAGCATCGTAAAGAATTTGAAAAAGTA
    GGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGT
    AAAGATGATGGTGTAGAAGTTTATGTGCATTGTGATGATCATGGCATTGTATTTAATGCA
    AGTCTACCTTTGTACAAAGATGCCATCCATCAAAAAGGATCAATGCGCAGTAATGACAAT
    GGTGATGATATGAGTATGATGGTGGGTACAGTGCTGAGTGGCTTTGAATATCGAGCGCAA
    AAAGAAAAGTATGATAACTTATATAAATTCTTCAAAGAAAATGAAAAGAAATATCAATAT
    ACAGGATTTACAAAAGAAGCAATAAACAAGACGCAAAACGTCGGGTATCAAAATGAATAT
    TTTTATATTACATATTTATCAAGAAATTTAAAAGAATATCGTAAATATTACGAACCATTG
    ATACATAAAAATGATAAAGAGTTTAAAGAAGGTATGCAACGAGCTAGAAAAGAGCTAAAC
    TATACTGCTAATACAAATACTGTAGCAACGTTGTTTAGCACGAATGATGAAAGGAATAGA
    AAAGAAAAGATAAATAATGTAATAGATTTATCCGAGAAAATTGAAAGAACAAAAGATATG
    CCAATCAAGAATACTATAACTACTCAATTAGGAAATAAACTTATTGGCACAAAAAAAGCT
    CGTTTTGATGATAAGAAAGTAGTGTCGTTTGGAGCATTTGAAGATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    951

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001475
  • symbol: JSNZ_001475
  • description: DUF1672 domain-containing protein
  • length: 316
  • theoretical pI: 8.98972
  • theoretical MW: 36528
  • GRAVY: -0.89019

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion protein EssA (TIGR03927; HMM-score: 17.3)
    and 2 more
    Cell structure Cell envelope Other uncharacterized lipoprotein (TIGR02722; HMM-score: 13.5)
    Cellular processes Cellular processes Sporulation and germination sporulation lipoprotein, YhcN/YlaJ family (TIGR02898; HMM-score: 12.4)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF1672; Protein of unknown function (DUF1672) (PF07901; HMM-score: 476)
    and 2 more
    HUP (CL0039) tRNA-synt_1c; tRNA synthetases class I (E and Q), catalytic domain (PF00749; HMM-score: 16.5)
    no clan defined DUF7537; Family of unknown function (DUF7537) (PF24381; HMM-score: 14.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 4.6
    • Cellwall Score: 2.48
    • Extracellular Score: 2.92
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0019
    • Cytoplasmic Membrane Score: 0.3364
    • Cell wall & surface Score: 0.0321
    • Extracellular Score: 0.6296
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
    • SP(Sec/SPI): 0.000517
    • TAT(Tat/SPI): 0.000075
    • LIPO(Sec/SPII): 0.999145
    • Cleavage Site: CS pos: 17-18. LSG-CS. Pr: 0.9996
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MFKKAKLILIATLLLSGCSAMNNESKKDTNTDTNTETNTEIKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCDDHGIVFNASLPLYKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFTKEAINKTQNVGYQNEYFYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNRKEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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