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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1378 [new locus tag: SAUSA300_RS07525 ]
  • pan locus tag?: SAUPAN003960000
  • symbol: SAUSA300_1378
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1378 [new locus tag: SAUSA300_RS07525 ]
  • symbol: SAUSA300_1378
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1543733..1544611
  • length: 879
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAATAATGAATCAAAAAAAGACACAAATACAGAAACAAATACAGAAACAAAATCAGTA
    CCAGAAGAAATGGAAGCTTCAAAATATGTAGGACAAGGCTTTCAACCACCTGCAGAAAAA
    GATGCGATTGAATTTGTGAAGAAGCATCGTAAAGAATTTGAAAAAGTAGGTGAACAATTC
    TTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGT
    GTAGAAGTTTATGTGCATTGCGAAGATCATGGCATTGTATTTAATGCAAGTCTACCTTTG
    TACAAAGATGCCATCCATCAAAAAGGATCAATGCGTAGTAATGACAACGGTGATGATATG
    AGTATGATGGTGGGTACAGTGCTGAGTGGCTTTGAATATCGAGCGCAAAAAGAAAAGTAT
    GATAATTTATATAAATTTTTAAAAGAAAATGAAAAGCAATATCAATATACAGGTTTTACT
    AAAGAAGCAATTAACAAGACGCAAAACGTCGGGTATCAAAATGAATATTTTTATATTACA
    TATTTATCAAGAAATTTAAAAGAATATAGAAAATATTACGAACCATTGATACATAAAAAT
    GATAAAGAGTTTAAAGAAGGTATGCAACGAGCTAGAAAAGAGCTAAACTATACTGCTAAT
    ACAAATACTGTAGCAACGTTGTTTAGTACGAATGATGAAAGGAATAGAAAAGAAAAGATA
    AATAATGTAATAGATTTATCCGAGAAAATTGAAAGAACAAAAGATATGCCAATCAAGAAT
    ACTATAACTACTCAATTAGGAAATAAACTTATTGGCACAAAAAAAGCTCGTTTTGATGAT
    AAGAAAGTAGTGTCGTTTGGAGCATTTGAAGATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    879

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1378 [new locus tag: SAUSA300_RS07525 ]
  • symbol: SAUSA300_1378
  • description: hypothetical protein
  • length: 292
  • theoretical pI: 8.29509
  • theoretical MW: 33988.9
  • GRAVY: -1.02911

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01107889: hypothetical protein
  • PFAM:
    no clan defined DUF1672; Protein of unknown function (DUF1672) (PF07901; HMM-score: 476)
    and 1 more
    HUP (CL0039) tRNA-synt_1c; tRNA synthetases class I (E and Q), catalytic domain (PF00749; HMM-score: 18.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.054
    • Cytoplasmic Membrane Score: 0.1112
    • Cell wall & surface Score: 0.035
    • Extracellular Score: 0.7998
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.014323
    • TAT(Tat/SPI): 0.003041
    • LIPO(Sec/SPII): 0.003229
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNNESKKDTNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEYFYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNRKEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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