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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001318
- pan locus tag?: SAUPAN003707000
- symbol: JSNZ_001318
- pan gene symbol?: katA
- synonym:
- product: catalase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001318
- symbol: JSNZ_001318
- product: catalase
- replicon: chromosome
- strand: +
- coordinates: 1325832..1327349
- length: 1518
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1501ATGTCACAACAAGACAAAAAGTTAACTGGTGTTTTTGGGCATCCAGTATCAGACCGAGAA
AATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAG
CAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCT
GGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATA
TTCTCTGAAATAGGTAAGCAAACCGAAATGTTTGCCCGTTTCTCTACTGTAGCAGGAGAA
CGTGGTGCTGCTGATGCGGAGCGTGACATTCGAGGATTTGCGTTAAAGTTCTACACTGAA
GAAGGGAACTGGGATTTAGTAGGGAATAACACACCAGTATTCTTCTTTAGAGATCCAAAG
TTATTTGTTAGTTTAAATCGTGCGGTGAAACGAGATCCTAGAACAAATATGAGAGATGCA
CAAAATAACTGGGATTTCTGGACGGGTCTTCCAGAAGCATTGCACCAAGTAACGATCTTA
ATGTCAGATAGAGGGATTCCTAAAGATTTACGTCATATGCATGGGTTCGGTTCTCACACA
TACTCTATGTATAATGATTCTGGTGAACGTGTTTGGGTTAAATTCCATTTTAGAACGCAA
CAAGGTATTGAAAACTTAACTGATGAAGAAGCTGCTGAAATTATAGCTACAGATCGTGAT
TCATCTCAACGCGATTTATTCGAAGCCATTGAAAAAGGTGATTATCCAAAATGGACAATG
TATATTCAAGTAATGACTGAGGAACAAGCTAAAAACCATAAAGATAATCCATTTGATTTA
ACAAAAGTATGGTATCACGATGAGTATCCTCTAATTGAAGTTGGAGAGTTTGAATTAAAT
AGAAATCCAGATAATTACTTTATGGATGTTGAACAAGCTGCGTTTGCACCAACTAATATT
ATTCCAGGATTAGATTTTTCTCCAGACAAAATGCTGCAAGGGCGTTTATTCTCATATGGC
GATGCGCAAAGATATCGATTAGGAGTTAATCATTGGCAGATTCCTGTAAACCAACCTAAA
GGTGTTGGTATTGAAAATATTTGTCCTTTTAGTAGAGATGGTCAAATGCGCGTAGTTGAC
AATAACCAAGGTGGAGGAACACATTATTATCCAAATAACCATGGTAAATTTGATTCTCAA
CCTGAATATAAAAAGCCACCATTCCCAACTGATGGATACGGCTATGAATATAATCAACGT
CAAGATGATGATAATTATTTTGAACAACCAGGTAAATTGTTTAGATTACAATCAGAGGAC
GCTAAAGAAAGAATTTTTACAAATACAGCAAATGCAATGGAAGGCGTAACGGATAATGTT
AAACGACGTCATATTCGTCATTGTTACAAAGCTGACCCAGAATATGGTAAAGGTGTTGCA
AAAGCATTAGGTATTGATATAAATTCTATTGATCTTGAAACTGAAAATGATGAAACATAC
GAAAACTTTGAAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001318
- symbol: JSNZ_001318
- description: catalase
- length: 505
- theoretical pI: 5.20919
- theoretical MW: 58378.5
- GRAVY: -0.845743
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: no clan defined Catalase; Catalase (PF00199; HMM-score: 609.6)and 1 moreCatalase-rel; Catalase-related immune-responsive (PF06628; HMM-score: 77.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.6432
- Cytoplasmic Membrane Score: 0.0013
- Cell wall & surface Score: 0.0006
- Extracellular Score: 0.3549
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.035586
- TAT(Tat/SPI): 0.006403
- LIPO(Sec/SPII): 0.001321
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MSQQDKKLTGVFGHPVSDRENSMTAGPRGPLLMQDIYFLEQMSQFDREVIPERRMHAKGSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNWDFWTGLPEALHQVTILMSDRGIPKDLRHMHGFGSHTYSMYNDSGERVWVKFHFRTQQGIENLTDEEAAEIIATDRDSSQRDLFEAIEKGDYPKWTMYIQVMTEEQAKNHKDNPFDLTKVWYHDEYPLIEVGEFELNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMEGVTDNVKRRHIRHCYKADPEYGKGVAKALGIDINSIDLETENDETYENFEK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulators: CodY (repression) regulon, PerR (repression) regulon
CodY (TF) important in Amino acid metabolism; regulation predicted or transferred from N315 and NCTC 8325 in Wolfgramm et al. (https://doi.org/10.1101/2025.09.03.674026) PerR (TF) important in Oxidative stress response; regulation predicted or transferred from N315 and NCTC 8325 in Wolfgramm et al. (https://doi.org/10.1101/2025.09.03.674026)
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]