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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001248
  • pan locus tag?: SAUPAN003577000
  • symbol: JSNZ_001248
  • pan gene symbol?: spoIIIE
  • synonym:
  • product: DNA translocase FtsK

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001248
  • symbol: JSNZ_001248
  • product: DNA translocase FtsK
  • replicon: chromosome
  • strand: +
  • coordinates: 1260948..1263317
  • length: 2370
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    TTGGCACAAGCAAAAAAGAAATCGACAGCTAAGAAAAAAACAACATCAAAAAAAAGAACA
    AATTCGAGGAAAAAGAAGAATGATAATCCGATACGTTATGTCATAGCTATTTTAGTAGTT
    GTATTAATGGTGTTGGGTGTTTTCCAATTAGGAATAATAGGTCGTCTAATTGACAGCTTC
    TTTAATTATTTATTTGGGTACAGTAGATATTTAACATATATTTTAGTACTCTTAGCAACT
    GGTTTTATTACATACTCTAAACGTATTCCTAAAACTAGACGAACGGCTGGTTCGATTGTA
    TTGCAAATTGCATTGCTATTTGTATCACAGTTAGTTTTTCATTTTAATAGTGGTATCAAA
    GCTGAAAGAGAACCTGTACTTTCTTATGTGTATCAGTCATACCAACACAGTCATTTCCCA
    AATTTTGGTGGCGGTGTATTAGGCTTTTATTTATTAGAGTTAAGCGTACCTTTAATTTCA
    TTATTTGGTGTATGTATTATTACTATTTTATTATTATGCTCAAGTGTTATTTTATTAACA
    AACCATCAACATCGTGAAGTCGCAAAAGTTGTACTGGAAAATATAAAAGCTTGGTTTGGT
    TCATTTAATGAAAAAATGTCGGAAAGAAACCAAGAAAAACAATTGAAGCGTGAAGAAAAA
    GCGAGACTTAAAGAAGAACAAAAGGCACGTCAAAATGAACAGCCACAAATAAAAGATGTG
    AGTGATTTTACGGAAGTGCCTCAAGAAAGAGATATTCCAATTTATGGGCATACTGAAAAT
    GAAAGTAAAAGTCAGAGTCAACCAAGTCGGAAAAAGCGAGTGTTTGATGCAGAGAATAGT
    TCGAATAACATCGTAAATCATCATCAAGCAGATCAGCAAGAACAATTAACAGAACAAACT
    CATAACAGTGTTGAAAGTGAAAACACTATTGAAGAAGCTGGTGAAGTTACGAATGTATCG
    TATGTTGTTCCACCGTTAACTTTACTTAATCAACCTGCAAAACAAAAAGCAACATCTAAA
    GCTGAAGTGCAACGTAAAGGACAAGTACTAGAGAATACATTAAAAGATTTTGGGGTAAAT
    GCAAAAGTGACACAAATTAAAATTGGTCCTGCAGTAACTCAATATGAAATTCAACCAGCT
    CAAGGGGTTAAAGTGAGTAAAATTGTAAACTTGCATAATGATATTGCATTAGCTTTAGCA
    GCAAAAGATGTTAGAATTGAAGCGCCAATACCTGGTCGCTCTGCAGTAGGTATTGAAGTG
    CCAAATGAGAAAATTTCATTAGTTTCACTAAAAGAAGTTTTAGATGAAAAATTCCCGTCT
    AATAATAAACTAGAAGTTGGATTAGGAAGAGATATATCAGGTGATCCAATTACTGTTCCA
    CTAAATGAAATGCCACACTTATTGGTGGCAGGATCGACGGGTAGTGGTAAATCTGTTTGT
    ATAAATGGTATTATTACAAGTGTTTTATTAAATGCTAAACCGCATGAAGTTAAACTTATG
    TTAATCGATCCGAAAATGGTTGAACTAAATGTTTATAACGGAATTCCACATTTATTAATT
    CCGGTTGTTACAAATCCTCATAAAGCTGCTCAAGCTTTAGAAAAAATTGTAGCTGAGATG
    GAAAGACGTTATGATTTATTCCAACATTCATCAACTAGAAATATTAAAGGTTATAACGAA
    TTAATCCGTAAGCAAAATCAAGAATTAGATGAGAAGCAACCAGAATTACCTTATATCGTT
    GTTATTGTAGATGAGCTTGCAGATTTAATGATGGTAGCTGGTAAAGAAGTTGAAAATGCG
    ATTCAACGTATCACACAAATGGCACGTGCAGCAGGTATACATTTGATTGTAGCGACACAA
    AGACCTTCTGTGGATGTAATTACAGGTATCATTAAAAATAATATTCCATCTAGAATAGCT
    TTTGCTGTGAGTTCTCAAACAGATTCAAGAACTATTATTGGTACTGGCGGCGCAGAAAAG
    TTACTTGGTAAAGGTGACATGTTATACGTTGGAAATGGTGACTCATCACAAACACGTATT
    CAAGGGGCGTTTTTAAGTGACCAAGAGGTGCAAGATGTTGTAAATTATGTAGTAGAACAA
    CAACAGGCAAATTATGTAAAAGAAATGGAACCAGATGCACCAGTGGATAAATCGGAAATG
    AAAAGTGAAGATGCTTTATATGATGAAGCGTATTTGTTTGTTGTTGAACAACAAAAGGCA
    AGTACATCATTGTTACAACGCAAATTTAGAATTGGTTATAATAGAGCATCTAGGTTGATG
    GATGATTTAGAACGCAATCAGGTAATCGGTCCACAAAAAGGAAGCAAGCCTAGACAAGTT
    TTAATAGATCTTAATAATGACGAGGTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2370

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001248
  • symbol: JSNZ_001248
  • description: DNA translocase FtsK
  • length: 789
  • theoretical pI: 9.16636
  • theoretical MW: 88186.6
  • GRAVY: -0.292522

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion protein EssC (TIGR03928; HMM-score: 123.5)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion protein EccCa (TIGR03924; HMM-score: 102.2)
    and 3 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion protein EccCb (TIGR03925; HMM-score: 64.7)
    Genetic information processing Mobile and extrachromosomal element functions Other conjugative coupling factor TraD, SXT/TOL subfamily (TIGR03743; HMM-score: 15.6)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cation transporter family protein (TIGR00860; HMM-score: 10.8)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    P-loop_NTPase (CL0023) FtsK_SpoIIIE; FtsK/SpoIIIE family (PF01580; HMM-score: 231.4)
    and 16 more
    no clan defined FtsK_alpha; FtsK alpha domain (PF17854; HMM-score: 121.1)
    HTH (CL0123) FtsK_gamma; Ftsk gamma domain (PF09397; HMM-score: 100.5)
    no clan defined FtsK_4TM; 4TM region of DNA translocase FtsK/SpoIIIE (PF13491; HMM-score: 24)
    P-loop_NTPase (CL0023) AAA_10; AAA-like domain (PF12846; HMM-score: 21.8)
    AAA_19; AAA domain (PF13245; HMM-score: 20)
    DUF87; Helicase HerA, central domain (PF01935; HMM-score: 17.3)
    nSTAND1; Novel STAND NTPase 1 (PF20703; HMM-score: 17.3)
    no clan defined Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region (PF02932; HMM-score: 15.1)
    P-loop_NTPase (CL0023) AAA_22; AAA domain (PF13401; HMM-score: 15)
    no clan defined CrgA; Cell division protein CrgA (PF06781; HMM-score: 13.9)
    P-loop_NTPase (CL0023) AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 13.1)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 12.8)
    ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 11.7)
    ClpP_crotonase (CL0127) Peptidase_S49_N; Peptidase family S49 N-terminal (PF08496; HMM-score: 10.8)
    no clan defined LMBR1; LMBR1-like membrane protein (PF04791; HMM-score: 10.4)
    TctB; Tripartite tricarboxylate transporter TctB family (PF07331; HMM-score: 9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0006
    • Cytoplasmic Membrane Score: 0.9954
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0038
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009707
    • TAT(Tat/SPI): 0.000164
    • LIPO(Sec/SPII): 0.001291
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MAQAKKKSTAKKKTTSKKRTNSRKKKNDNPIRYVIAILVVVLMVLGVFQLGIIGRLIDSFFNYLFGYSRYLTYILVLLATGFITYSKRIPKTRRTAGSIVLQIALLFVSQLVFHFNSGIKAEREPVLSYVYQSYQHSHFPNFGGGVLGFYLLELSVPLISLFGVCIITILLLCSSVILLTNHQHREVAKVVLENIKAWFGSFNEKMSERNQEKQLKREEKARLKEEQKARQNEQPQIKDVSDFTEVPQERDIPIYGHTENESKSQSQPSRKKRVFDAENSSNNIVNHHQADQQEQLTEQTHNSVESENTIEEAGEVTNVSYVVPPLTLLNQPAKQKATSKAEVQRKGQVLENTLKDFGVNAKVTQIKIGPAVTQYEIQPAQGVKVSKIVNLHNDIALALAAKDVRIEAPIPGRSAVGIEVPNEKISLVSLKEVLDEKFPSNNKLEVGLGRDISGDPITVPLNEMPHLLVAGSTGSGKSVCINGIITSVLLNAKPHEVKLMLIDPKMVELNVYNGIPHLLIPVVTNPHKAAQALEKIVAEMERRYDLFQHSSTRNIKGYNELIRKQNQELDEKQPELPYIVVIVDELADLMMVAGKEVENAIQRITQMARAAGIHLIVATQRPSVDVITGIIKNNIPSRIAFAVSSQTDSRTIIGTGGAEKLLGKGDMLYVGNGDSSQTRIQGAFLSDQEVQDVVNYVVEQQQANYVKEMEPDAPVDKSEMKSEDALYDEAYLFVVEQQKASTSLLQRKFRIGYNRASRLMDDLERNQVIGPQKGSKPRQVLIDLNNDEV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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