From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000258
  • pan locus tag?: SAUPAN001223000
  • symbol: JSNZ_000258
  • pan gene symbol?: —
  • synonym:
  • product: formate/nitrite transporter family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS, pseudogene
  • locus tag: JSNZ_000258
  • symbol: JSNZ_000258
  • product: formate/nitrite transporter family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 292314..293137
  • length: 824
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    GTGAAGGAGAAACATATTAAATGGGATAAAATATTTTATGGGGACGACTGGGTAAATAAC
    GTAGTCGAAACAATAAGAACAAAAGATATATTACAAAGCGTTTATTTAAAACGTTATTTA
    TTACGCGCGATGATGGCAGGATTTATTATCGGTATTATTACGGTCTTCGTGCTATCAGTT
    AAAGCAACACACGAACCAGATTTACCACCAGGTATAGTGAATATGGCCAGCGCCATTACA
    TTCAGCTTTGCGTTAGTACTCATTTTATTTACAAACTCCGAACTACTAACCAGTAACTTC
    ATGTACTTTACTGTAGGCCTGTATTATAAAGTAATTAAACCGACTAGAGTATTGAAAATA
    TTTTTATTGTGCTTTGCAGGAAATATTTTAGGTGCTGCCATTTTATTTAGTTTCATGCGT
    TTTTCAAATGTAATGACGCCAGATATGTTAAATCAGTTATCAGCAGTTATAGAGCATAAA
    ACGTTGTCTACTGGTTTTGTAAGTATATTAATGAAAGCGATATTCGCCAATTTCTTTATC
    AATATTTCATTAGTTATTGCCATGCAAATTGACGATGTACTCGCAAAATGTTTGTCATGA
    TGTTCGGTGTTACCATATTCGCCTTTATGGGTTATGAACACGTAGTTTACAACAGTTGCT
    TATTTATGGGTGGTTTAATTTATCAAGTTGATACATTGCACTTCATACCAGCTATTTCGA
    ATATCGCTGCGGCTTTTATCGGTAACTATATTGGAGGCGGACTCATTATAGGTTTATTCT
    ATGCTTACTTGAATGATCATCATCAATTTTATAAAAATAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    824

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000258
  • symbol: JSNZ_000258
  • description: formate/nitrite transporter family protein
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb:
  • DeepLocPro:
  • LocateP:
  • SignalP:
  • predicted transmembrane helices (TMHMM):

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Rex* (repression) regulon
    Rex*(TF)important in Energy metabolism;  regulation predicted or transferred from N315 and NCTC 8325  [1]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
    Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
    Curr Res Microb Sci: 2025, 9;100489
    [PubMed:41146725] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=JSNZ_000258&oldid=105899"