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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0406 [new locus tag: SA_RS02320 ]
  • pan locus tag?: SAUPAN002146000
  • symbol: SA0406
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0406 [new locus tag: SA_RS02320 ]
  • symbol: SA0406
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 465491..466816
  • length: 1326
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAAAGATAAATACAAAATAGATCCAGGGATTATTAAAAATAATACAGAGGAAACTACA
    GCTATTTCTAAAATCAGCTACGAAGTTGAAAATGCGAATTTATATGGAGCTGATAGTGAA
    GATATAACAAGACAAATAGAATATTTGAAAGCCAAAAAAAAATTCCCTTCTAATCTTGAA
    TATGTTGATAGTTACACTGATTCTCTTAATGGAGTAACAACTTCTGCTTTTTTAAATAAA
    GATACAGGCAAAGTAACTCTTGGGATGACTGGGACTAATATACAAGGCGAAGCCTTTAAA
    AAGTTAAAAGAAGGTGAATTTTCAAGACAAAATGTTACCAATGCTTTGGAAACAGTTAAA
    GATGGATATGCAGATCTTAAAATATTATATTCTCCTGCATCTGATCAAAACTATAGATAT
    GCGAATACACAAGAATTTATAAATAAAATAAAAAGTAAGTATGACATTGATTTTATTACT
    GGTCATTCACTAGGTGGAAGAGATGCGGTAGTTCTTGGAATGAGTAATGGTATTCCGAAC
    ATTGTGGTTTATAATCCAGCTCCTATTTCTATAAATAGTTTGAATCCTAATTCCCCAGAT
    GGAAAACGATTGTTAGAGTTATATAAAAATTATAAAGGTAATATTACTAGGTTTGTTGCA
    GAAAATGATGCATTGACAGAAAATCTGAAGAAATATAAGCATTATGTTTTTTTCGGTAAT
    GATAAAGTCTTTAAAAATGGTAAAGGTCATGAAATGGAAGGCTTTCTGACCGAAGAAGAA
    CAAAAAGCTATAAAAAAAGAACTTAAAAAACTACAAGGTTATGCAGAAGAAAATAATAAG
    TCATTTGTAAAGAATTCAAATAATGCTATCTCTAAATTAGCTAGTATAGAATTACTTAGA
    GCAAATATGATGACTACAAATGGAGGAGGATTATCTTCTTCGCAGCAAAAAGTTTTAGAA
    AGTTTAACAGCTTTAACAATTGCGCAGTCATTCAGTCAACTGATAGACGATGAAATTAAT
    CAAATCAAAAAAATGTATAATGAAAAGAAAAAGGAATTTGGAAAAAATTGGGAAGACGCT
    CAAAAAGCTGGAAAAGCTGTAGGTGAAGATTTGAGTGTAAATGGAGTTCTCAATGCTTTA
    GATGAAGGTCAAGTGAATGAAAGTAGTATGGTAAGAGAACCTGAACAAATGATATCTGCA
    AAAGAAAGACAACTTTCAACGATAGGGTCTTCTGTATCAAATTATATTATGAGAGTTAGA
    CTCAGTATTAATGAAATCGTTGATAAAGATCAAGTGCTTGCATCACAAATAGGTGGATTA
    CTATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1326

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0406 [new locus tag: SA_RS02320 ]
  • symbol: SA0406
  • description: hypothetical protein
  • length: 441
  • theoretical pI: 6.84039
  • theoretical MW: 49149.1
  • GRAVY: -0.593878

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01107856: hypothetical protein
  • ⊞PFAM:
    AB_hydrolase (CL0028) Lipase_3; Lipase (class 3) (PF01764; HMM-score: 14.1)
    BD-FAE; BD-FAE (PF20434; HMM-score: 13.9)
    UPF0227; Uncharacterised protein family (UPF0227) (PF05728; HMM-score: 12.7)
    and 1 more
    RXXXE-like (CL0797) DUF5677; Family of unknown function (DUF5677) (PF18928; HMM-score: 7.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0003
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0005
    • Extracellular Score: 0.9991
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013876
    • TAT(Tat/SPI): 0.000785
    • LIPO(Sec/SPII): 0.002522
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKDKYKIDPGIIKNNTEETTAISKISYEVENANLYGADSEDITRQIEYLKAKKKFPSNLEYVDSYTDSLNGVTTSAFLNKDTGKVTLGMTGTNIQGEAFKKLKEGEFSRQNVTNALETVKDGYADLKILYSPASDQNYRYANTQEFINKIKSKYDIDFITGHSLGGRDAVVLGMSNGIPNIVVYNPAPISINSLNPNSPDGKRLLELYKNYKGNITRFVAENDALTENLKKYKHYVFFGNDKVFKNGKGHEMEGFLTEEEQKAIKKELKKLQGYAEENNKSFVKNSNNAISKLASIELLRANMMTTNGGGLSSSQQKVLESLTALTIAQSFSQLIDDEINQIKKMYNEKKKEFGKNWEDAQKAGKAVGEDLSVNGVLNALDEGQVNESSMVREPEQMISAKERQLSTIGSSVSNYIMRVRLSINEIVDKDQVLASQIGGLL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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