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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS04710 [old locus tag: SACOL0918 ]
  • pan locus tag?: SAUPAN002899000
  • symbol: SACOL_RS04710
  • pan gene symbol?: sufB
  • synonym:
  • product: Fe-S cluster assembly protein SufB

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS04710 [old locus tag: SACOL0918 ]
  • symbol: SACOL_RS04710
  • product: Fe-S cluster assembly protein SufB
  • replicon: chromosome
  • strand: +
  • coordinates: 925370..926767
  • length: 1398
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (925370..926767) NCBI
  • BioCyc: SACOL_RS04710 BioCyc
  • MicrobesOnline: see SACOL0918

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGCTAAAAAAGCACCTGATGTTGGGGATTATAAATATGGATTCCACGACGATGATGTG
    TCCATTTTCAGATCAGAACGTGGTTTAACTGAGAATATCGTTAGAGAAATTTCTAACATG
    AAAAATGAGCCGGAATGGATGTTAGATTTCCGTCTTAAATCATTAAAATTGTTTTATAAA
    ATGCCAATGCCTCAATGGGGTGGCGACTTATCAGAATTGAATTTCGATGACATTACTTAC
    TATGTAAAGCCTTCAGAACAAGCTGAACGTTCATGGGATGAAGTGCCAGAAGAAATTAAA
    AGAACTTTCGATAAATTAGGAATTCCTGAAGCTGAACAAAAATATTTAGCTGGTGTTTCT
    GCTCAATATGAATCTGAAGTTGTTTACCATAATATGGAAAAAGAACTTGAAGAAAAAGGT
    ATTATCTTTAAAGATACAGATAGTGCTTTACAAGAAAATGAAGAATTATTCAAAAAATAC
    TTTGCTTCTGTAGTACCTGCAGCAGATAACAAATTTGCGGCGTTAAACTCAGCAGTATGG
    TCAGGTGGTTCGTTCATTTATGTACCTAAAAATATCAAACTAGATACGCCACTACAAGCT
    TATTTCCGTATTAACTCTGAGAACATGGGTCAATTTGAACGTACATTAATCATTGCTGAT
    GAAGGTGCTTCTGTACATTACGTAGAAGGTTGTACTGCACCAGTTTATACAACTAGTTCT
    TTACACTCTGCTGTTGTGGAAATCATTGTGCATAAAGATGCGCACGTTCGTTATACTACG
    ATTCAAAACTGGGCGAACAATGTATACAATTTAGTTACAAAACGTACTTTTGTTTATGAA
    AACGGAAATATGGAATGGGTAGATGGTAACTTAGGTTCTAAGTTAACGATGAAATATCCA
    AACTGTGTTCTTTTAGGTGAAGGTGCAAAAGGTAGTACATTATCTATTGCATTTGCTGGT
    AAAGGACAAGTTCAAGATGCCGGTGCTAAAATGATTCATAAAGCACCTAATACATCTTCT
    ACAATTGTTTCTAAATCTATTTCTAAAAATGGTGGTAAAGTTATTTATCGCGGTATTGTT
    CATTTTGGACGTAAAGCAAAAGGTGCTCGTTCAAATATTGAATGTGATACATTAATCTTA
    GATAACGAATCAACATCAGATACAATTCCATATAACGAAGTATTCAACGATCAAATATCA
    TTAGAACATGAAGCCAAGGTTTCAAAAGTTTCTGAAGAACAATTATTCTATCTAATGAGT
    CGTGGTATTTCTGAAGAAGAAGCGACAGAAATGATTGTTATGGGATTCATCGAACCATTT
    ACAAAAGAACTTCCAATGGAATACGCGGTCGAAATGAACCGTTTAATCAAGTTCGAAATG
    GAAGGTAGTATTGGATAG
    60
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    840
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    1140
    1200
    1260
    1320
    1380
    1398

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS04710 [old locus tag: SACOL0918 ]
  • symbol: SACOL_RS04710
  • description: Fe-S cluster assembly protein SufB
  • length: 465
  • theoretical pI: 4.81321
  • theoretical MW: 52531.1
  • GRAVY: -0.397849

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly protein SufB (TIGR01980; HMM-score: 767.9)
    and 1 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly protein SufD (TIGR01981; HMM-score: 201.1)
  • TheSEED: see SACOL0918
  • ⊞PFAM:
    no clan defined SUFBD_core; SUF system FeS cluster assembly, SufBD core domain (PF01458; HMM-score: 296.4)
    and 1 more
    SufBD_N; SufBD protein N-terminal region (PF19295; HMM-score: 37.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.6585
    • Cytoplasmic Membrane Score: 0.0979
    • Cell wall & surface Score: 0.0016
    • Extracellular Score: 0.242
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003263
    • TAT(Tat/SPI): 0.000265
    • LIPO(Sec/SPII): 0.000357
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAKKAPDVGDYKYGFHDDDVSIFRSERGLTENIVREISNMKNEPEWMLDFRLKSLKLFYKMPMPQWGGDLSELNFDDITYYVKPSEQAERSWDEVPEEIKRTFDKLGIPEAEQKYLAGVSAQYESEVVYHNMEKELEEKGIIFKDTDSALQENEELFKKYFASVVPAADNKFAALNSAVWSGGSFIYVPKNIKLDTPLQAYFRINSENMGQFERTLIIADEGASVHYVEGCTAPVYTTSSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYENGNMEWVDGNLGSKLTMKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL0918
  • protein localization: see SACOL0918
  • quantitative data / protein copy number per cell: see SACOL0918
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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