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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07085 [old locus tag: SACOL1392 ]
  • pan locus tag?: SAUPAN003744000
  • symbol: SACOL_RS07085
  • pan gene symbol?: alsT
  • synonym:
  • product: alanine:cation symporter family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS07085 [old locus tag: SACOL1392 ]
  • symbol: SACOL_RS07085
  • product: alanine:cation symporter family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1400622..1402097
  • length: 1476
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1400622..1402097) NCBI
  • BioCyc: SACOL_RS07085 BioCyc
  • MicrobesOnline: see SACOL1392

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
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    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    TTGAAAGATTTCGATAGTTTAATACCTGGATGGTTTAAAGAATTTGTCCATGTTGGTACC
    GATTTAATATGGTCTCAATATTTAATTGGTCTATTATTGACAGCTGGATTCTTCTTTACG
    ATTAGTTCTAAATTCGTTCAATTACGAATGTTACCTGAAATGTTTAGAGCTTTAGTAGAA
    CGTCCAGAAACTTTAGAAGATGGTAAGAAGGGTATTTCGCCATTCCAAGCATTTGCGATT
    AGTGCTGGTTCGAGAGTTGGTACTGGTAATATTGCTGGTGTTGCGACTGCGATTGTTTTA
    GGCGGTCCAGGTGCAGTATTTTGGATGTGGGTTATTGCATTTATAGGTGCAGCGAGTGCA
    TTTATAGAAGCGACTTTGGCTCAGGTTTATAAAGTACATGATAAAGATGGTGGATTCCGT
    GGTGGTCCAGCTTACTATATTACTAAAGGTTTAAATCAAAAATGGCTAGGTATCGTATTT
    GCGATTTTAATTACAATTACATTTGCATTTGTATTTAACACAGTGCAATCTAATACAATT
    GCGGAGTCGTTAAATACGCAATATAATATTAGTCCAGTAATCACAGGTATTATTTTAGCA
    ATCGTAACAGCTATTATTATATTTGGTGGTGTACGTAGTATTGCTACGTTATCTTCGTTA
    ATTGTACCGATTATGGCTATCATTTACATTGGTATGGTTTTAGTAATATTGCTATTTAAT
    TTAGATCAAATTGTTCCTATGATAGGTACGATTATTAAAAGTGCATTTGGTATCGAACAA
    GTAACTGGTGGCGCTGTAGGTGCTGCGGTTCTTCAAGGTATCAAACGTGGTTTATTCTCT
    AACGAAGCTGGTATGGGTTCTGCGCCGAATGCAGCGGCAACTGCTGCCGTACCACACCCT
    GTTAAGCAAGGTTTAATCCAATCATTAGGTGTGTTCTTTGATACAATGTTGGTTTGTACA
    GCAACTGCAATCATGATTTTACTATATTCAGGACTGAAATTTGGTGATAACGCACCTCAA
    GGTGTTGCAGTTACTCAATCAGCACTTAATGAGCATTTAGGTTCTGCTGGAGGTATTTTC
    TTAACAATAGCAGTTACACTGTTTGCATTTTCATCTGTTGTAGGTAATTACTATTACGGT
    CAATCTAATATTGAATTTTTATCAACAAACCGTGTAATATTATTTATCTTTAGATGTCTT
    GTTGTAGTACTTGTCTTTGTCGGTGCAGTTGTAAAAACAGAAACAGTATGGAATACGGCA
    GACTTATTTATGGGCTTAATGGCAATTGTAAACATTATTTCCATTATAGGACTGTCCAAT
    GTAGCTTTTGCATTGATGAAAGATTATCAAAAGCAGAAAAAAGAAGGCAAGAACCCTGTC
    TTTAAACCTGAAAACTTAGAAATTAACTTATTTGGAATTAGTGCTTGGGGCGCTAACAAA
    TATAAGAACTCTGATAAACAAATATTTTTAATGTAA
    60
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    1320
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    1440
    1476

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS07085 [old locus tag: SACOL1392 ]
  • symbol: SACOL_RS07085
  • description: alanine:cation symporter family protein
  • length: 491
  • theoretical pI: 9.31622
  • theoretical MW: 52773.8
  • GRAVY: 0.7

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    amino acid carrier protein (TIGR00835; HMM-score: 508.5)
    and 2 more
    phenylacetic acid degradation protein PaaD (TIGR02286; HMM-score: 16.7)
    exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 5.7)
  • TheSEED: see SACOL1392
  • PFAM:
    APC (CL0062) Na_Ala_symp; Sodium:alanine symporter family (PF01235; HMM-score: 552.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9997
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0003
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001736
    • TAT(Tat/SPI): 0.000269
    • LIPO(Sec/SPII): 0.001098
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKDFDSLIPGWFKEFVHVGTDLIWSQYLIGLLLTAGFFFTISSKFVQLRMLPEMFRALVERPETLEDGKKGISPFQAFAISAGSRVGTGNIAGVATAIVLGGPGAVFWMWVIAFIGAASAFIEATLAQVYKVHDKDGGFRGGPAYYITKGLNQKWLGIVFAILITITFAFVFNTVQSNTIAESLNTQYNISPVITGIILAIVTAIIIFGGVRSIATLSSLIVPIMAIIYIGMVLVILLFNLDQIVPMIGTIIKSAFGIEQVTGGAVGAAVLQGIKRGLFSNEAGMGSAPNAAATAAVPHPVKQGLIQSLGVFFDTMLVCTATAIMILLYSGLKFGDNAPQGVAVTQSALNEHLGSAGGIFLTIAVTLFAFSSVVGNYYYGQSNIEFLSTNRVILFIFRCLVVVLVFVGAVVKTETVWNTADLFMGLMAIVNIISIIGLSNVAFALMKDYQKQKKEGKNPVFKPENLEINLFGISAWGANKYKNSDKQIFLM

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1392
  • protein localization: see SACOL1392
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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