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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0215 [new locus tag: SACOL_RS01100 ]
  • pan locus tag?: SAUPAN001096000
  • symbol: SACOL0215
  • pan gene symbol?: fadX
  • synonym:
  • product: propionate CoA-transferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0215 [new locus tag: SACOL_RS01100 ]
  • symbol: SACOL0215
  • product: propionate CoA-transferase
  • replicon: chromosome
  • strand: -
  • coordinates: 254673..256244
  • length: 1572
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    GTGACTTGCTTGAAACAAATCACATGGCACGACTTACAACATATCATTAAAGATGGTGAT
    GTGATTGGTTTACCAGCATTAGCTGTAGCCAACTTACCCGCCGAAGTTCTACGTGCTGTG
    TTAGCGCAACATGACACATATCATACGCCCAATGATTTAACGTTTATATTAGCGAATGAT
    ATTCATAGTTTAGGTGCCGCACCGGATTTAGATGATTTTATAGAACGTCGCATGATTAAA
    CGTGTCATTATGAGTATTTTAACGGCTTCTTCCAAAACGGCACAAGCAATGAAAAATAAT
    GACATTGAAGCTTATTTTTTACCACAAGGTATCATTGCAACTCATTATCGTCAGAGTAAT
    CAATTATTACCTGGAGTTATTACTAAAATCGGATTAAACACAGCTGTTGATCCTAGATAC
    GGTGGCGGTAAAGTAAATACACGAACAACGGATGATTTAGTTTCATTAGTAACCATCAAC
    GATGAAACATACTTACATTACACATTCCCTAGCGTTGATGTGGCACTACTGAGAGGAACA
    TACGCAGATCAACAAGGTAACATTTATTTAACTCAAGAAGCGTACTTGAGCGAGTGTTAT
    CATGTCGCATTAAACGCGAAAGCCAATCATGGGAAAGTTATTGTACAAGTTAAAGCTTTA
    GTTGACGACTATCAACTAAAACCGAATGAAGTTGTTATCCCAGGAAATCTTGTCGATTAT
    GTATACGTCACAGAAGATGAAAAGAATCACCGCCAAGTAATTCAAAGTCATTATTTACCA
    GCCTTGTCTGGAGAAGAACGAATTGATGGAATACCTGAACCCGCATTACCTTTTAATAGT
    CGCAAATTGATTCTCCGACGTGCTGCTCAGTTTTTAACTTATGGCGATACAATTAGCATC
    GGTTATGGCATCAATAATGAACTCTCTAATTTATTGCATGAAGAATGTGTTGAACATGAT
    GTGCAACCGATTTTAGATGTTGGCATTTTCGGTGGATTCGTTGGGAGTCGTGAACATTTT
    GGTATGAATTACAATGCAGATGTGCGCATGCCTCATGATCGAGCATGGGATTTTATTTAT
    AACAATGGTGTATCAGTTGCCTATCTTAGCTTTGCTGAGGTTGATCAATACGGCAATGTC
    AACGTGTCTTACTTCAATGACCGACTAAATGGATGTGGTGGCTTTATAGACATTACGCAA
    TCTGTAAATAAAATTATCTTTTCAGGTACTTTTGTAGCTGGCAGTCATGTCTCATGCCAT
    AATCAACGATTAAACATTGAAACTGAAGGACAAAACCAGAAATTTGTATCAGATGTGAGC
    CATATCGACTTTAATGCACAATATTCACAATCACTCGAGCAAGAAATCTATTTTGTTACT
    GATCGTGCAGTATTCGAACTCACCAATCAAGGCTTGAAACTAATTGAAATTGCACCAGGT
    CTTGATTTGCATAAAGATATTTTGAATCAAATGGCTTTTAAACCAATTATTGCTGATCAT
    TTAAAATTAATTGATACCAGCATTTACAAAGAAAAATGGGGACAACTTAAACAATCAATT
    CATAAAGTATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1572

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0215 [new locus tag: SACOL_RS01100 ]
  • symbol: SACOL0215
  • description: propionate CoA-transferase
  • length: 523
  • theoretical pI: 5.61752
  • theoretical MW: 58648
  • GRAVY: -0.165201

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    3-oxoacid CoA-transferase, A subunit (TIGR02429; EC 2.8.3.-; HMM-score: 39.3)
    and 3 more
    3-oxoacid CoA-transferase, B subunit (TIGR02428; EC 2.8.3.-; HMM-score: 26.5)
    Metabolism Transport and binding proteins Cations and iron carrying compounds malonate decarboxylase, alpha subunit (TIGR01110; HMM-score: 23.7)
    Metabolism Energy metabolism Other malonate decarboxylase, alpha subunit (TIGR01110; HMM-score: 23.7)
  • TheSEED  :
    • FIG01108629: hypothetical protein
  • ⊞PFAM:
    NADP_Rossmann (CL0063) CoA_trans; Coenzyme A transferase (PF01144; HMM-score: 58.4)
    and 3 more
    Mal_decarbox_Al; Malonate decarboxylase, alpha subunit, transporter (PF16957; HMM-score: 21.3)
    AcetylCoA_hydro; Acetyl-CoA hydrolase/transferase N-terminal domain (PF02550; HMM-score: 17.1)
    no clan defined Curlin_rpt; Curlin associated repeat (PF07012; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9649
    • Cytoplasmic Membrane Score: 0.0184
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0166
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01593
    • TAT(Tat/SPI): 0.003501
    • LIPO(Sec/SPII): 0.000875
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTCLKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPNDLTFILANDIHSLGAAPDLDDFIERRMIKRVIMSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVTINDETYLHYTFPSVDVALLRGTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLVDYVYVTEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYGINNELSNLLHEECVEHDVQPILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDITQSVNKIIFSGTFVAGSHVSCHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQSLEQEIYFVTDRAVFELTNQGLKLIEIAPGLDLHKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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