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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus N315
  • locus tag: SA0881 [new locus tag: SA_RS04980 ]
  • pan locus tag?: SAUPAN003206000
  • symbol: SA0881
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0881 [new locus tag: SA_RS04980 ]
  • symbol: SA0881
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1000937..1002451
  • length: 1515
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Gene ID: 1123699 NCBI
  • RefSeq: NP_374145 NCBI
  • BioCyc: see SA_RS04980
  • MicrobesOnline: 103171 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCATAGT
    CATTTCTTAAATGGTGATTATGGTTCAAATATTTATAGAGCTGGTACTTATGTTAACCAA
    ATAAGAGCACAAAATCATCGCGTCATTTTATTAGATAGTGGCGGAAGTTTAGCTGGCTCG
    TTAGCGGCCTATTATTATGCTATTGTTGCACCTTATAAACGACATCCAATGATAAAGTTA
    ATGAACAGAATGCATTATGATGCTAGCGGTGTGAGTCCAAGTGAATTCAAGTTTGGTTTA
    TCATTTTTAACTCGTTCAATTGCTTTGGCACGTTTTCCATGGTTATCAGCAAATATTGAA
    TACAATGTTACTAAGGAGCCTTATTTTTCAACTCCATATTGTATTAAACATTTTGGTGAC
    TTAAAAATTGCTATCGTAGGCGTCACAGCAGATGGTTTAATGGAAAATGAGTATTCTGAA
    ATGGAGCAAGATGTATCTATTGAAAAGACATTAGTGGCATCAAAACGTTGGATTAGATAT
    ATCCATGAAGTTGAAGAGCCAGATTTTTTGATTGTAATTTATCATGGTGGATTGAATAAA
    ATTAGTAATAGTACGAAAAATAAAAAGGCAAGTTCGAATGAAGCTGAAAAATTAATGGAA
    GAACTCGGTGTTATAGATTTAATGATTACAGCTCATCAGCATCAAACAATAGTAGGTCAA
    GATCATGAAACGTATTATGTTCAGGCTGGTCAGGATGCCAAAGAGCTTGTACATCTTTCG
    ATTAATTTTAAAAAGAGAACAACAACTTATGATGTTGAAAGCATTGATTCTAAAGTGATT
    GACTTAAATGAGTATGAAGAGGATCAAGAATTATTAGATTTAACATTCTATGATAGAAAA
    GCAGTGGCTTATTGGTCACAGGAAATCATAAGTGATAAAGGTTTGATGTTATCAGTGAAT
    GGGTTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATT
    CAGCTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGG
    TTGAGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCA
    ATGGATATGACAATTAGTGGTCAAAATATCAAAGATATATTGGAGTATAGTTATTCACAT
    TTAGATTTTGTTAACGAGCAATTAAGCTTAACAATTATTGATGAAACGTTATGTACAATG
    TGGCAAGGATTCAATTATGAGATTGATATGAATCAAGAACCTGGGCAACGAGTAATGTTA
    GATCAAATTGATTTGACTAAGAGTTATAGAGTTACAATGACTGACTATTGTTATCGTAAC
    TACAAGAATTATTTAAAAAATGCTATTATACATGAATCGTACGATGAAACAATGAGTACA
    TTAATTGCAGAGAAGTTAAGAGATCCGAATTATCGTATTTCATGTAGTGATAATTTTGTA
    GTTAAAAACAGGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1515

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0881 [new locus tag: SA_RS04980 ]
  • symbol: SA0881
  • description: hypothetical protein
  • length: 504
  • theoretical pI: 4.94184
  • theoretical MW: 58049.2
  • GRAVY: -0.398016

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Other 2',3'-cyclic-nucleotide 2'-phosphodiesterase (TIGR01390; EC 3.1.4.16; HMM-score: 87.7)
    and 1 more
    Genetic information processing Protein synthesis Translation factors translation elongation factor Ts (TIGR00116; HMM-score: 15)
  • ⊞TheSEED  :
    • 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)
    Nucleosides and Nucleotides Purines Purine conversions  2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)
    and 2 more
    Nucleosides and Nucleotides Pyrimidines pyrimidine conversions  2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)
    Potassium metabolism Potassium metabolism - no subcategory Glutathione-regulated potassium-efflux system and associated functions  2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)
  • ⊞PFAM:
    NadN_C (CL0781) 5_nucleotid_C; 5'-nucleotidase, C-terminal domain (PF02872; HMM-score: 56.5)
    and 2 more
    Calcineurin (CL0163) Metallophos; Calcineurin-like phosphoesterase (PF00149; HMM-score: 20.4)
    no clan defined DNA_Packaging_2; DNA packaging protein (PF11123; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8074
    • Cytoplasmic Membrane Score: 0.0354
    • Cell wall & surface Score: 0.0042
    • Extracellular Score: 0.153
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 0.83
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.056371
    • TAT(Tat/SPI): 0.002436
    • LIPO(Sec/SPII): 0.00456
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI: 15926612 NCBI
  • RefSeq: NP_374145 NCBI
  • UniProt: A0A0H3JPI9 UniProt

⊟Protein sequence[edit | edit source]

  • MMEKNENINVEILTTSDMHSHFLNGDYGSNIYRAGTYVNQIRAQNHRVILLDSGGSLAGSLAAYYYAIVAPYKRHPMIKLMNRMHYDASGVSPSEFKFGLSFLTRSIALARFPWLSANIEYNVTKEPYFSTPYCIKHFGDLKIAIVGVTADGLMENEYSEMEQDVSIEKTLVASKRWIRYIHEVEEPDFLIVIYHGGLNKISNSTKNKKASSNEAEKLMEELGVIDLMITAHQHQTIVGQDHETYYVQAGQDAKELVHLSINFKKRTTTYDVESIDSKVIDLNEYEEDQELLDLTFYDRKAVAYWSQEIISDKGLMLSVNGLQDLVCQTHPFSQLLHDAIQLAFDNDITCVHVPMNGEKGLSGQIRNEDLYHAYPYPDKPMDMTISGQNIKDILEYSYSHLDFVNEQLSLTIIDETLCTMWQGFNYEIDMNQEPGQRVMLDQIDLTKSYRVTMTDYCYRNYKNYLKNAIIHESYDETMSTLIAEKLRDPNYRISCSDNFVVKNR

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: no polycistronic organisation predicted

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA0881&oldid=62231"
  • This page was last edited on 10 March 2016, at 16:20.
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