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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS04980 [old locus tag: SA0881 ]
  • pan locus tag?: SAUPAN003206000
  • symbol: SA_RS04980
  • pan gene symbol?: —
  • synonym:
  • product: bifunctional metallophosphatase/5'-nucleotidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS04980 [old locus tag: SA0881 ]
  • symbol: SA_RS04980
  • product: bifunctional metallophosphatase/5'-nucleotidase
  • replicon: chromosome
  • strand: +
  • coordinates: 1000940..1002451
  • length: 1512
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1000940..1002451) NCBI
  • BioCyc: SA_RS04980 BioCyc
  • MicrobesOnline: see SA0881

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCATAGTCAT
    TTCTTAAATGGTGATTATGGTTCAAATATTTATAGAGCTGGTACTTATGTTAACCAAATA
    AGAGCACAAAATCATCGCGTCATTTTATTAGATAGTGGCGGAAGTTTAGCTGGCTCGTTA
    GCGGCCTATTATTATGCTATTGTTGCACCTTATAAACGACATCCAATGATAAAGTTAATG
    AACAGAATGCATTATGATGCTAGCGGTGTGAGTCCAAGTGAATTCAAGTTTGGTTTATCA
    TTTTTAACTCGTTCAATTGCTTTGGCACGTTTTCCATGGTTATCAGCAAATATTGAATAC
    AATGTTACTAAGGAGCCTTATTTTTCAACTCCATATTGTATTAAACATTTTGGTGACTTA
    AAAATTGCTATCGTAGGCGTCACAGCAGATGGTTTAATGGAAAATGAGTATTCTGAAATG
    GAGCAAGATGTATCTATTGAAAAGACATTAGTGGCATCAAAACGTTGGATTAGATATATC
    CATGAAGTTGAAGAGCCAGATTTTTTGATTGTAATTTATCATGGTGGATTGAATAAAATT
    AGTAATAGTACGAAAAATAAAAAGGCAAGTTCGAATGAAGCTGAAAAATTAATGGAAGAA
    CTCGGTGTTATAGATTTAATGATTACAGCTCATCAGCATCAAACAATAGTAGGTCAAGAT
    CATGAAACGTATTATGTTCAGGCTGGTCAGGATGCCAAAGAGCTTGTACATCTTTCGATT
    AATTTTAAAAAGAGAACAACAACTTATGATGTTGAAAGCATTGATTCTAAAGTGATTGAC
    TTAAATGAGTATGAAGAGGATCAAGAATTATTAGATTTAACATTCTATGATAGAAAAGCA
    GTGGCTTATTGGTCACAGGAAATCATAAGTGATAAAGGTTTGATGTTATCAGTGAATGGG
    TTACAAGATTTAGTCTGTCAAACACATCCATTTTCGCAATTATTACATGATGCAATTCAG
    CTTGCATTTGATAATGATATAACATGTGTCCACGTGCCTATGAACGGAGAGAAGGGGTTG
    AGTGGACAGATTCGAAATGAAGATTTGTATCATGCATACCCATATCCAGATAAGCCAATG
    GATATGACAATTAGTGGTCAAAATATCAAAGATATATTGGAGTATAGTTATTCACATTTA
    GATTTTGTTAACGAGCAATTAAGCTTAACAATTATTGATGAAACGTTATGTACAATGTGG
    CAAGGATTCAATTATGAGATTGATATGAATCAAGAACCTGGGCAACGAGTAATGTTAGAT
    CAAATTGATTTGACTAAGAGTTATAGAGTTACAATGACTGACTATTGTTATCGTAACTAC
    AAGAATTATTTAAAAAATGCTATTATACATGAATCGTACGATGAAACAATGAGTACATTA
    ATTGCAGAGAAGTTAAGAGATCCGAATTATCGTATTTCATGTAGTGATAATTTTGTAGTT
    AAAAACAGGTAA
    60
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    1260
    1320
    1380
    1440
    1500
    1512

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS04980 [old locus tag: SA0881 ]
  • symbol: SA_RS04980
  • description: bifunctional metallophosphatase/5'-nucleotidase
  • length: 503
  • theoretical pI: 4.94184
  • theoretical MW: 57918
  • GRAVY: -0.402584

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Other 2',3'-cyclic-nucleotide 2'-phosphodiesterase (TIGR01390; EC 3.1.4.16; HMM-score: 87.7)
    and 1 more
    Genetic information processing Protein synthesis Translation factors translation elongation factor Ts (TIGR00116; HMM-score: 15)
  • TheSEED: see SA0881
  • PFAM:
    no clan defined 5_nucleotid_C; 5'-nucleotidase, C-terminal domain (PF02872; HMM-score: 55.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.066044
    • TAT(Tat/SPI): 0.00243
    • LIPO(Sec/SPII): 0.004245
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEKNENINVEILTTSDMHSHFLNGDYGSNIYRAGTYVNQIRAQNHRVILLDSGGSLAGSLAAYYYAIVAPYKRHPMIKLMNRMHYDASGVSPSEFKFGLSFLTRSIALARFPWLSANIEYNVTKEPYFSTPYCIKHFGDLKIAIVGVTADGLMENEYSEMEQDVSIEKTLVASKRWIRYIHEVEEPDFLIVIYHGGLNKISNSTKNKKASSNEAEKLMEELGVIDLMITAHQHQTIVGQDHETYYVQAGQDAKELVHLSINFKKRTTTYDVESIDSKVIDLNEYEEDQELLDLTFYDRKAVAYWSQEIISDKGLMLSVNGLQDLVCQTHPFSQLLHDAIQLAFDNDITCVHVPMNGEKGLSGQIRNEDLYHAYPYPDKPMDMTISGQNIKDILEYSYSHLDFVNEQLSLTIIDETLCTMWQGFNYEIDMNQEPGQRVMLDQIDLTKSYRVTMTDYCYRNYKNYLKNAIIHESYDETMSTLIAEKLRDPNYRISCSDNFVVKNR

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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