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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

organism: Staphylococcus aureus N315

locus tag: SA1376 [new locus tag: SA_RS07785 ]

pan locus tag^?: SAUPAN004125000

symbol: SA1376

pan gene symbol^?: —

synonym:
product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SA1376 [new locus tag: SA_RS07785 ]
symbol: SA1376
product: hypothetical protein
replicon: chromosome
strand: -
coordinates: 1581845..1582174
length: 330
essential: no DEG other strains

⊟Accession numbers[edit | edit source]

Gene ID: 1124216 NCBI
RefSeq: NP_374659 NCBI
BioCyc: see SA_RS07785
MicrobesOnline: 103685 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
ATGGCTATTGTTGATGTGGTTGTTATTCCAGTTGGAACGGAAGGTCCGAGTGTTAGTAAA
TATATTGCAGATATTCAGAAAAAACTTCAAGAATATAAAGCAATGGGTAAAATTGATTTT
CAATTAACACCAATGAATACTCTAATTGAAGGTGAATTAAGCGATGTATTAGAAGTTGTG
CAAGTGATACATGAATTACCTTTTGATAAAGGTTTAAGTAGAGTTTGTACAAATATCCGT
ATTGATGACCGACGAGACAAATCTAGAAAAATGAATGATAAACTAACATCAGTACAAAAA
CATTTAGAAAATAGTGGTGAAAACCTATGA
60
120
180
240
300
330

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SA1376 [new locus tag: SA_RS07785 ]
symbol: SA1376
description: hypothetical protein
length: 109
theoretical pI: 5.75172
theoretical MW: 12282.1
GRAVY: -0.301835

⊟Function[edit | edit source]

TIGRFAM:
Unknown function General uncharacterized protein, MTH1187 family (TIGR00106; HMM-score: 113.6)
TheSEED :
- DUF77 protein YqgV
⊞PFAM:
MTH1187-YkoF (CL0360) Thiamine_BP; Thiamine-binding protein (PF01910; HMM-score: 107.5)
and 1 more
no clan defined DUF2732; Protein of unknown function (DUF2732) (PF10809; HMM-score: 17.1)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9928
- Cytoplasmic Membrane Score: 0.0002
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0069
⊞
LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003994
- TAT(Tat/SPI): 0.000143
- LIPO(Sec/SPII): 0.000378
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 15927126 NCBI
RefSeq: NP_374659 NCBI
UniProt: A0A0H3JQ73 UniProt

⊟Protein sequence[edit | edit source]

MAIVDVVVIPVGTEGPSVSKYIADIQKKLQEYKAMGKIDFQLTPMNTLIEGELSDVLEVVQVIHELPFDKGLSRVCTNIRIDDRRDKSRKMNDKLTSVQKHLENSGENL

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL, NCTC8325
protein localization: data available for COL
quantitative data / protein copy number per cell: data available for COL
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

MicrobesOnline: SA1369 < SA1370 < SA1371 < SA1372 < SA1373 < SA1374 < SA1375 < SA1376 < glcK < SA1378 < SA1379 < SA1380

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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