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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus COL

locus tag: SACOL_RS06910 [old locus tag: SACOL1357 ]

pan locus tag^?: SAUPAN003694000

symbol: SACOL_RS06910

pan gene symbol^?: nuc2

synonym:
product: thermonuclease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SACOL_RS06910 [old locus tag: SACOL1357 ]
symbol: SACOL_RS06910
product: thermonuclease
replicon: chromosome
strand: +
coordinates: 1363130..1363663
length: 534
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_002951 (1363130..1363663) NCBI
BioCyc: SACOL_RS06910 BioCyc
MicrobesOnline: see SACOL1357

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
361
421
481
ATGAAGTCAAATAAATCGCTTGCTATGATTGTGGTAGCCATCATTATTGTAGGTGTATTA
GCATTTCAATTTATGAATCATACGGGTCCTTTCAAAAAGGGGACGAATCATGAAACTGTA
CAAGATTTAAATGGTAAAGATAAAGTACATGTTCAAAGAGTTGTGGATGGTGATACATTT
ATTGCAAATCAAAATGGTAAAGAAATTAAAGTTAGGCTTATAGGGGTTGATACGCCAGAA
ACGGTGAAACCGAATACGCCTGTACAACCATTTGGCAAAGAAGCATCAAATTATAGTAAG
AAGACATTAACAAATCAAGATGTTTATTTAGAATATGATAAAGAAAAACAAGATCGCTAT
GGTAGAACATTGGCGTATGTATGGATAAGTAAAGATCGTATGTACAATAAGGAATTAGTG
GAAAAGGGACTTGCTAGAGAGAAGTATTTTTCACCAAATGGCAAATATAGAAATGTATTT
ATAGAAGCACAAAATAAAGCTAAACAACAGAAATTAAATATTTGGAGTAAATAA
60
120
180
240
300
360
420
480
534

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SACOL_RS06910 [old locus tag: SACOL1357 ]
symbol: SACOL_RS06910
description: thermonuclease
length: 177
theoretical pI: 10.2676
theoretical MW: 20328.2
GRAVY: -0.69096

⊟Function[edit | edit source]

TIGRFAM:
TheSEED: see SACOL1357
PFAM:
SH3 (CL0010) SNase; Staphylococcal nuclease homologue (PF00565; HMM-score: 112.4)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0
- Extracellular Score: 10
- Internal Helix: 1
⊞
DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0005
- Cytoplasmic Membrane Score: 0.7061
- Cell wall & surface Score: 0.0038
- Extracellular Score: 0.2896
LocateP:
⊞
SignalP: Signal peptide SP(Sec/SPI) length 28 aa
- SP(Sec/SPI): 0.576138
- TAT(Tat/SPI): 0.002296
- LIPO(Sec/SPII): 0.041752
- Cleavage Site: CS pos: 28-29. NHT-GP. Pr: 0.0688
predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

GI: 446764095 NCBI
RefSeq: WP_000841351 NCBI
UniProt: see SACOL1357

⊟Protein sequence[edit | edit source]

MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTNQDVYLEYDKEKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKYFSPNGKYRNVFIEAQNKAKQQKLNIWSK

⊟Experimental data[edit | edit source]

experimentally validated: see SACOL1357
protein localization: see SACOL1357
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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