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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0733 [new locus tag: NWMN_RS04155 ]
  • pan locus tag?: SAUPAN002689000
  • symbol: NWMN_0733
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0733 [new locus tag: NWMN_RS04155 ]
  • symbol: NWMN_0733
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 825535..826446
  • length: 912
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGGATAATAATGAAAAAGAAAAAAGTAAAAGTGAACTATTAGTTGTAACAGGTTTATCT
    GGCGCAGGTAAATCTTTGGTTATTCAATGTTTAGAAGACATGGGATATTTTTGTGTAGAT
    AATCTACCACCAGTGTTATTGCCTAAATTTGTAGAGTTGATGGAACAAGGAAATCCATCC
    TTAAGAAAAGTGGCAATTGCAATTGATTTAAGAGGTAAGGAACTATTTAATTCATTAGTT
    GCAGTAGTGGATAAAGTCAAAAGTGAAAGTGACGTCATCATTGATGTTATGTTTTTAGAA
    GCAAGTACTGAAAAATTAATTTCAAGATATAAGGAAACGCGTCGTGCACATCCTTTGATG
    GAACAAGGTAAAAGATCGTTAATCAATGCAATTAATGATGAGCGAGAGCATTTGTCTCAA
    ATTAGAAGTATAGCTAATTTTGTTATAGATACTACAAAGTTATCACCTAAAGAATTAAAA
    GAACGCATTCGTCGATACTATGAAGATGAAGAGTTTGAAACTTTTACAATTAATGTCACA
    AGTTTCGGTTTTAAACATGGGATTCAGATGGATGCAGATTTAGTATTTGATGTACGATTT
    TTACCAAATCCATATTATGTAGTAGATTTAAGACCTTTAACAGGATTAGATAAAGACGTT
    TATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTG
    TTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATC
    GGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTA
    AATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGC
    GAGAAAAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    912

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0733 [new locus tag: NWMN_RS04155 ]
  • symbol: NWMN_0733
  • description: hypothetical protein
  • length: 303
  • theoretical pI: 5.71204
  • theoretical MW: 34811.8
  • GRAVY: -0.30066

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 15.2)
    Metabolism Central intermediary metabolism Sulfur metabolism adenylyl-sulfate kinase (TIGR00455; EC 2.7.1.25; HMM-score: 14.7)
  • TheSEED  :
    • RNase adapter protein RapZ
    Experimental tye  Hypothetical ATP-binding protein UPF0042, contains P-loop
  • ⊞PFAM:
    P-loop_NTPase (CL0023) RapZ-like_N; RapZ-like N-terminal domain (PF03668; HMM-score: 167.3)
    Phosphatase (CL0031) PapZ_C; RapZ C-terminal domain (PF22740; HMM-score: 166.7)
    and 13 more
    P-loop_NTPase (CL0023) SKI; Shikimate kinase (PF01202; HMM-score: 18.9)
    AAA_22; AAA domain (PF13401; HMM-score: 18)
    AAA_18; AAA domain (PF13238; HMM-score: 16.9)
    Phage_TACs (CL0567) Phage_TAC_3; Phage tail assembly chaperone proteins, TAC (PF06896; HMM-score: 15.9)
    P-loop_NTPase (CL0023) AAA_33; AAA domain (PF13671; HMM-score: 15.6)
    DnaB_C; DnaB-like helicase C terminal domain (PF03796; HMM-score: 15.5)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 14.7)
    AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 14.6)
    PGM_I-III (CL0754) PGM_PMM_II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II (PF02879; HMM-score: 14)
    P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 13.4)
    Rad17; Rad17 P-loop domain (PF03215; HMM-score: 13.3)
    TPR (CL0020) DUF1186; Protein of unknown function (DUF1186) (PF06685; HMM-score: 13.2)
    P-loop_NTPase (CL0023) RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9184
    • Cytoplasmic Membrane Score: 0.0111
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0705
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.017699
    • TAT(Tat/SPI): 0.006084
    • LIPO(Sec/SPII): 0.015606
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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