PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

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⊟Summary

• organism: Staphylococcus aureus N315
locus tag: SA_RS12820 [old locus tag: SA2232 ]
pan locus tag^?: SAUPAN005995000
symbol: SA_RS12820
pan gene symbol^?: —
• synonym:
• product: 2-dehydropantoate 2-reductase

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS12820 [old locus tag: SA2232 ]
• symbol: SA_RS12820
• product: 2-dehydropantoate 2-reductase
• replicon: chromosome
• strand: -
• coordinates: 2506626..2507561
• length: 936
• essential: no DEG other strains

⊟Accession numbers

• Location: NC_002745 (2506626..2507561) NCBI
• BioCyc: SA_RS12820 BioCyc
• MicrobesOnline: see SA2232

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
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  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  
  ATGAAAATTGCAATTGCTGGATCGGGTGCATTAGGTAGTGGCTTTGGTGCCAAACTATTT
  CAAGCAGGATATGATGTCACACTTATTGACGGATATACATCTCATGTTGAAGCGGTTAAG
  CAACATGGATTAAATATAACGATTAATGGAGAGGCATTCGAGTTAAACATTCCGATGTAT
  CATTTTAATGATCAACGGGACGAAAGCATTTACGATGTTGTCTTTCTATTTCCAAAGTCT
  ATGCAATTAAAAGAAGTGATGGAAGATATGAAGCCACATATTGATAATGAAACGATCGTC
  GTATGTACGATGAATGGTCTGAAGCATGAAGAAGTCATTGCGCAGTATGTTGCTCAATCA
  CAAATTGTCAGAGGTGTTACGACTTGGACGGCAGGTCTTGAAAGCCCTGGACACAGTCAT
  TTACTTGGTAGTGGACCAGTTGAAATAGGTGAACTAGTGGATGAAGGTAAAGAAAATGTT
  ATAAAAGTTGCTGATTTACTTAACGAAGCGGAATTGAATGGTGTCATTAGTAAAGATTTA
  TACCAATCGATTTGGAAAAAGATTTGTGTTAATGGTACGGCAAATGCATTAAGCACAGTG
  TTGGAGTGTAATATGGCATCACTGAATGAAAGTAGTTATGCGAAGTGTTTGATTTATAAA
  TTAACGCAAGAAATAGTGCATGTAGCGACGATTGATAATGTTCATTTAAATGTTGATGAA
  GCATTTGAATATTTAGTTGATTTAAATGAAAAAGTTGGTGCGCATTATCCATCCATGTAT
  CAAGATTTAATTGTTAATAATAGAAAAACTGAAATTGATTATATTAATGGCGCAGTTGCA
  ACATTGGGTAAACAACGTCATATTGAAGCGCCAGTCAATCGCTTTATTACTGATTTAATT
  CATACTAAAGAAAGTCAGCGACACGCACAGGATTAA
  60
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  420
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  936
  

⊟Protein

⊟General

• locus tag: SA_RS12820 [old locus tag: SA2232 ]
• symbol: SA_RS12820
• description: 2-dehydropantoate 2-reductase
• length: 311
• theoretical pI: 4.87232
• theoretical MW: 34474.9
• GRAVY: -0.134405

⊟Function

• ⊞reaction:
  EC 1.1.1.169?  ExPASy
  2-dehydropantoate 2-reductase (R)-pantoate + NADP⁺ = 2-dehydropantoate + NADPH
• ⊞TIGRFAM:
  Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pantothenate and coenzyme A 2-dehydropantoate 2-reductase (TIGR00745; EC 1.1.1.-; HMM-score: 304)
  and 4 more
  Cellular processes Cellular processes Toxin production and resistance tellurite resistance protein TehB (TIGR00477; HMM-score: 17.6)
  Metabolism Energy metabolism Electron transport NADPH-dependent F420 reductase (TIGR01915; HMM-score: 16)
  nucleotide sugar dehydrogenase (TIGR03026; HMM-score: 14.7)
  selenium-dependent molybdenum hydroxylase system protein, YqeB family (TIGR03309; HMM-score: 11.8)
• TheSEED: see SA2232
• ⊞PFAM:
  NADP_Rossmann (CL0063) ApbA; Ketopantoate reductase PanE/ApbA (PF02558; HMM-score: 142.7)
  6PGD_C (CL0106) ApbA_C; Ketopantoate reductase PanE/ApbA C terminal (PF08546; HMM-score: 118.9)
  and 9 more
  NADP_Rossmann (CL0063) NAD_Gly3P_dh_N; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus (PF01210; HMM-score: 25.6)
  NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase (PF03446; HMM-score: 21.7)
  F420_oxidored; NADP oxidoreductase coenzyme F420-dependent (PF03807; HMM-score: 19.8)
  3HCDH_N; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain (PF02737; HMM-score: 19.5)
  TrkA_N; TrkA-N domain (PF02254; HMM-score: 17.6)
  UDPG_MGDP_dh_N; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain (PF03721; HMM-score: 16.9)
  no clan defined DUF4172; Domain of unknown function (DUF4172) (PF13776; HMM-score: 15.4)
  NADP_Rossmann (CL0063) TehB; Tellurite resistance protein TehB (PF03848; HMM-score: 14.4)
  FAD_binding_3; FAD binding domain (PF01494; HMM-score: 12.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• ⊞DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.9952
  • Cytoplasmic Membrane Score: 0.0041
  • Cell wall & surface Score: 0.0002
  • Extracellular Score: 0.0005
• LocateP:
• ⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.119015
  • TAT(Tat/SPI): 0.002171
  • LIPO(Sec/SPII): 0.03313
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446606714 NCBI
• RefSeq: WP_000684060 NCBI
• UniProt: see SA2232

⊟Protein sequence

• MKIAIAGSGALGSGFGAKLFQAGYDVTLIDGYTSHVEAVKQHGLNITINGEAFELNIPMYHFNDQRDESIYDVVFLFPKSMQLKEVMEDMKPHIDNETIVVCTMNGLKHEEVIAQYVAQSQIVRGVTTWTAGLESPGHSHLLGSGPVEIGELVDEGKENVIKVADLLNEAELNGVISKDLYQSIWKKICVNGTANALSTVLECNMASLNESSYAKCLIYKLTQEIVHVATIDNVHLNVDEAFEYLVDLNEKVGAHYPSMYQDLIVNNRKTEIDYINGAVATLGKQRHIEAPVNRFITDLIHTKESQRHAQD

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell: data available for COL
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications