⊟Summary[edit | edit source]

PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus COL
locus tag: SACOL_RS11000 [old locus tag: SACOL2102 ]
pan locus tag^?: SAUPAN005401000
symbol: SACOL_RS11000
pan gene symbol^?: atpI
• synonym:
• product: ATP synthase

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SACOL_RS11000 [old locus tag: SACOL2102 ]
• symbol: SACOL_RS11000
• product: ATP synthase
• replicon: chromosome
• strand: -
• coordinates: 2163262..2163714
• length: 453
• essential: unknown other strains

⊟Accession numbers

• Location: NC_002951 (2163262..2163714) NCBI
• BioCyc: SACOL_RS11000 BioCyc
• MicrobesOnline: see SACOL2102

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  TTGAATAGAATTGACACCACAAATCGCCTATATTATCATTTAGTTTGTATGAGTGGAACG
  GTTTTCATGATTGATATCAGTCACACGGAGGCATATAAAATGAGTCGTTTCTACAACATT
  TTTAAACAGTTCATTCAATATTATTTTTATCTAATAATAATATTGGGAGGATTATACCTT
  TATACACACCATGCATTTATCTTAGGATTAATCATTGGTGTTACTGGTTCTGCAATCAAC
  ACATGTATTTTTGAATGCTATTTAGCTAAAGCTAAAAGACCAGACACTATGCATATTTCA
  ACTGGAAATATGTGGCGATACTTAGTTGCAATTATTGCCTGTATGATTTGGTACCTTAAT
  AAAGCGCATGTAAGTATCATCGGTATAATTATTGGTTTAATGATTTCATATGTTGTAGTT
  ATCATACGTCCTTTACTAAAGGTGAGCAAATAA
  60
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  453
  

⊟Protein

⊟General

• locus tag: SACOL_RS11000 [old locus tag: SACOL2102 ]
• symbol: SACOL_RS11000
• description: ATP synthase
• length: 150
• theoretical pI: 9.57806
• theoretical MW: 17393.9
• GRAVY: 0.703333

⊟Function

• TIGRFAM:
• TheSEED: see SACOL2102
• ⊞⊞PFAM:
  ATPase_I_AtpR (CL0478) ATP-synt_I; ATP synthase I chain (PF03899; HMM-score: 31.2)
  and 3 more
  no clan defined MNHE; Na+/H+ ion antiporter subunit (PF01899; HMM-score: 14.2)
  GNVR; G-rich domain on putative tyrosine kinase (PF13807; HMM-score: 10.8)
  RRM_4; RNA recognition motif of the spliceosomal PrP8 (PF10598; HMM-score: 9.4)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞⊞PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 4
• ⊞⊞DeepLocPro: Cytoplasmic Membrane
  • Cytoplasmic Score: 0.0001
  • Cytoplasmic Membrane Score: 0.9993
  • Cell wall & surface Score: 0
  • Extracellular Score: 0.0006
• LocateP:
• ⊞⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.045313
  • TAT(Tat/SPI): 0.000388
  • LIPO(Sec/SPII): 0.015066
• predicted transmembrane helices (TMHMM): 4

⊟Accession numbers

• GI: see SACOL2102
• RefSeq: WP_001801792 NCBI
• UniProt: see SACOL2102

⊟Protein sequence

• MNRIDTTNRLYYHLVCMSGTVFMIDISHTEAYKMSRFYNIFKQFIQYYFYLIIILGGLYLYTHHAFILGLIIGVTGSAINTCIFECYLAKAKRPDTMHISTGNMWRYLVAIIACMIWYLNKAHVSIIGIIIGLMISYVVVIIRPLLKVSK

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications