From AureoWiki

Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus COL

locus tag: SACOL_RS01295 [old locus tag: SACOL0254 ]

pan locus tag^?: SAUPAN001155000

symbol: SACOL_RS01295

pan gene symbol^?: rbsD

synonym:
product: D-ribose pyranase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SACOL_RS01295 [old locus tag: SACOL0254 ]
symbol: SACOL_RS01295
product: D-ribose pyranase
replicon: chromosome
strand: -
coordinates: 294763..295167
length: 405
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_002951 (294763..295167) NCBI
BioCyc: SACOL_RS01295 BioCyc
MicrobesOnline: see SACOL0254

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
361
ATGAAAAAATCAGCTGTTTTAAATGAACATATTTCAAAAGCAATCGCGACAATTGGTCAT
TTTGATTTATTAACGATTAATGACGCTGGCATGCCAATTCCAAATGATCATCGTCGTATC
GACCTAGCTGTAACTAAAAACTTACCACGCTTTATTGATGTCTTAGCTACAGTGTTAGAA
GAAATGGAAATCCAAAAAATATACTTAGCAGAAGAAATAAAAGAACATAACCCTACACAA
TTGCAACAAATTAAACAATTGATTTCATCGGAAATCGAAATCATTTTCATTCCTCACGAA
GAAATGAAAAGTAACTTAGCTCACCCATTAAATAAAGGTAATATTCGTACTGGTGAAACA
ACGCCCTACTCTAATATTGCATTAGAATCGAATGTTACTTTTTAA
60
120
180
240
300
360
405

⊟Protein[edit | edit source]

3P12
PDB
3P13
PDB

Protein Data Bank: 3P12

⊟General[edit | edit source]

locus tag: SACOL_RS01295 [old locus tag: SACOL0254 ]
symbol: SACOL_RS01295
description: D-ribose pyranase
length: 134
theoretical pI: 5.9179
theoretical MW: 15165.4
GRAVY: -0.214179

⊟Function[edit | edit source]

⊞reaction:
EC 5.4.99.62? ExPASy
D-ribose pyranase Beta-D-ribopyranose = beta-D-ribofuranose
TIGRFAM:
TheSEED: see SACOL0254
⊞PFAM:
PELOTA (CL0101) RbsD_FucU; RbsD / FucU transport protein family (PF05025; HMM-score: 134.6)
and 1 more
no clan defined Myb_Cef; pre-mRNA splicing factor component (PF11831; HMM-score: 15.5)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
⊞
DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9982
- Cytoplasmic Membrane Score: 0.0003
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0014
LocateP:
⊞
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003241
- TAT(Tat/SPI): 0.000164
- LIPO(Sec/SPII): 0.000854
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 446670527 NCBI
RefSeq: WP_000747873 NCBI
UniProt: see SACOL0254

⊟Protein sequence[edit | edit source]

MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF

⊟Experimental data[edit | edit source]

experimentally validated: see SACOL0254
protein localization: see SACOL0254
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator: CcpA see SACOL0254

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL_RS01295&oldid=74135"