⊟Summary[edit | edit source]

PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
locus tag: SA_RS04010 [old locus tag: SA0705 ]
pan locus tag^?: SAUPAN002659000
symbol: SA_RS04010
pan gene symbol^?: comFA
• synonym:
• product: comf operon protein 1

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS04010 [old locus tag: SA0705 ]
• symbol: SA_RS04010
• product: comf operon protein 1
• replicon: chromosome
• strand: +
• coordinates: 803615..804697
• length: 1083
• essential: no DEG other strains

⊟Accession numbers

• Location: NC_002745 (803615..804697) NCBI
• BioCyc: SA_RS04010 BioCyc
• MicrobesOnline: see SA0705

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
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  301
  361
  421
  481
  541
  601
  661
  721
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  841
  901
  961
  1021
  1081
  
  ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATAT
  TATCATCTCTCATTTGAATTGTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGA
  GCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAACAGGTGCAGGTAAGACAGAA
  ATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
  CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAA
  GATATAGACATACTACACCAGCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGC
  ACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATACTATTTTTATTGATGAAGTC
  GATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
  GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATT
  CCCCACGAAAATATAATTAAATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCT
  AAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGAAAATGTTATACCGAATTTTA
  CAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
  ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAG
  GATGTTTTTCGCTTTGAAAAAGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTT
  ACTACGACAATATTAGAACGTGGATTTACAATGGCAAATTTGGATGTTGTTGTTATCGAT
  GCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
  GAATGTCCTGCTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAA
  GCTAAAAAAGAGATTCAAAGGATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAA
  TAA
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  1080
  1083
  

⊟Protein

⊟General

• locus tag: SA_RS04010 [old locus tag: SA0705 ]
• symbol: SA_RS04010
• description: comf operon protein 1
• length: 360
• theoretical pI: 9.69237
• theoretical MW: 42017.2
• GRAVY: -0.329167

⊟Function

• ⊞⊞TIGRFAM:
  CRISPR-associated helicase Cas3 (TIGR01587; HMM-score: 54.1)
  Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit B (TIGR00631; EC 3.1.25.-; HMM-score: 46)
  and 4 more
  Genetic information processing DNA metabolism DNA replication, recombination, and repair primosomal protein N' (TIGR00595; EC 3.6.1.-; HMM-score: 31.4)
  Genetic information processing DNA metabolism DNA replication, recombination, and repair transcription-repair coupling factor (TIGR00580; EC 3.6.1.-; HMM-score: 20.2)
  helicase/secretion neighborhood putative DEAH-box helicase (TIGR03817; HMM-score: 19.7)
  Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA threonylcarbamoyl adenosine modification protein YjeE (TIGR00150; HMM-score: 14.2)
• TheSEED: see SA0705
• ⊞⊞PFAM:
  P-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 54.1)
  Helicase_C; Helicase conserved C-terminal domain (PF00271; HMM-score: 48.4)
  and 10 more
  DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 36.9)
  Cas3-like_C_2; CRISPR-associated nuclease/helicase Cas3, C-terminal (PF22590; HMM-score: 27.9)
  no clan defined PrpR_N; Propionate catabolism activator (PF06506; HMM-score: 21.4)
  P-loop_NTPase (CL0023) Flavi_DEAD; Flavivirus DEAD domain (PF07652; HMM-score: 21.2)
  Helicase_RecD; Helicase (PF05127; HMM-score: 20.6)
  AAA_19; AAA domain (PF13245; HMM-score: 19.4)
  UvrD-helicase; UvrD/REP helicase N-terminal domain (PF00580; HMM-score: 17.7)
  AAA_30; AAA domain (PF13604; HMM-score: 17.2)
  TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 15.7)
  AAA_24; AAA domain (PF13479; HMM-score: 12.4)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞⊞PSORTb: Cytoplasmic
  • Cytoplasmic Score: 9.97
  • Cytoplasmic Membrane Score: 0
  • Cellwall Score: 0.01
  • Extracellular Score: 0.02
  • Internal Helices: 0
• ⊞⊞DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.9396
  • Cytoplasmic Membrane Score: 0.0588
  • Cell wall & surface Score: 0.0005
  • Extracellular Score: 0.0011
• LocateP:
• ⊞⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.009182
  • TAT(Tat/SPI): 0.000635
  • LIPO(Sec/SPII): 0.000736
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 486217175 NCBI
• RefSeq: WP_001557172 NCBI
• UniProt: see SA0705

⊟Protein sequence

• MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications